[HTML][HTML] Ancient pathogen genomics as an emerging tool for infectious disease research

MA Spyrou, KI Bos, A Herbig, J Krause - Nature Reviews Genetics, 2019 - nature.com
Over the past decade, a genomics revolution, made possible through the development of
high-throughput sequencing, has triggered considerable progress in the study of ancient …

Ancient DNA damage

J Dabney, M Meyer, S Pääbo - Cold Spring Harbor …, 2013 - cshperspectives.cshlp.org
Under favorable conditions DNA can survive for thousands of years in the remains of dead
organisms. The DNA extracted from such remains is invariably degraded to a small average …

[图书][B] Environmental DNA: For biodiversity research and monitoring

P Taberlet, A Bonin, L Zinger, E Coissac - 2018 - books.google.com
Environmental DNA (eDNA) refers to DNA that can be extracted from environmental
samples (such as soil, water, feces, or air) without the prior isolation of any target organism …

Neandertal and Denisovan DNA from Pleistocene sediments

V Slon, C Hopfe, CL Weiß, F Mafessoni… - Science, 2017 - science.org
Although a rich record of Pleistocene human-associated archaeological assemblages
exists, the scarcity of hominin fossils often impedes the understanding of which hominins …

The complete genome sequence of a Neanderthal from the Altai Mountains

K Prüfer, F Racimo, N Patterson, F Jay… - Nature, 2014 - nature.com
We present a high-quality genome sequence of a Neanderthal woman from Siberia. We
show that her parents were related at the level of half-siblings and that mating among close …

Single-cell whole-genome analyses by Linear Amplification via Transposon Insertion (LIANTI)

C Chen, D Xing, L Tan, H Li, G Zhou, L Huang, XS Xie - Science, 2017 - science.org
Single-cell genomics is important for biology and medicine. However, current whole-
genome amplification (WGA) methods are limited by low accuracy of copy-number variation …

Detecting ultralow-frequency mutations by Duplex Sequencing

SR Kennedy, MW Schmitt, EJ Fox, BF Kohrn, JJ Salk… - Nature protocols, 2014 - nature.com
Duplex Sequencing (DS) is a next-generation sequencing methodology capable of
detecting a single mutation among> 1× 107 wild-type nucleotides, thereby enabling the …

Partial uracil–DNA–glycosylase treatment for screening of ancient DNA

N Rohland, E Harney, S Mallick… - … Transactions of the …, 2015 - royalsocietypublishing.org
The challenge of sequencing ancient DNA has led to the development of specialized
laboratory protocols that have focused on reducing contamination and maximizing the …

A draft sequence of the Neandertal genome

RE Green, J Krause, AW Briggs, T Maricic, U Stenzel… - science, 2010 - science.org
Neandertals, the closest evolutionary relatives of present-day humans, lived in large parts of
Europe and western Asia before disappearing 30,000 years ago. We present a draft …

[PDF][PDF] Multiple deeply divergent Denisovan ancestries in Papuans

GS Jacobs, G Hudjashov, L Saag, P Kusuma… - Cell, 2019 - cell.com
Genome sequences are known for two archaic hominins—Neanderthals and Denisovans—
which interbred with anatomically modern humans as they dispersed out of Africa. We …