TAREAN: a computational tool for identification and characterization of satellite DNA from unassembled short reads

P Novák, L Ávila Robledillo, A Koblížková… - Nucleic acids …, 2017 - academic.oup.com
Satellite DNA is one of the major classes of repetitive DNA, characterized by tandemly
arranged repeat copies that form contiguous arrays up to megabases in length. This type of …

Comparative analysis of tandem repeats from hundreds of species reveals unique insights into centromere evolution

DP Melters, KR Bradnam, HA Young, N Telis, MR May… - Genome biology, 2013 - Springer
Background Centromeres are essential for chromosome segregation, yet their DNA
sequences evolve rapidly. In most animals and plants that have been studied, centromeres …

In Depth Characterization of Repetitive DNA in 23 Plant Genomes Reveals Sources of Genome Size Variation in the Legume Tribe Fabeae

J Macas, P Novák, J Pellicer, J Čížková, A Koblížková… - PloS one, 2015 - journals.plos.org
The differential accumulation and elimination of repetitive DNA are key drivers of genome
size variation in flowering plants, yet there have been few studies which have analysed how …

Plant evolution by means of hybridization

V Wissemann - Systematics and Biodiversity, 2007 - Taylor & Francis
Hybridization in plants has been shown to be one of the most creative forces for the
evolution of earth's biodiversity. In this review, the historical development of hybrid research …

Personal perspectives on plant ribosomal RNA genes research: from precursor-rRNA to molecular evolution

V Hemleben, D Grierson, N Borisjuk… - Frontiers in Plant …, 2021 - frontiersin.org
The history of rDNA research started almost 90 years ago when the geneticist, Barbara
McClintock observed that in interphase nuclei of maize the nucleolus was formed in …

Non-random distribution of 5S rDNA sites and its association with 45S rDNA in plant chromosomes

F Roa, M Guerra - Cytogenetic and Genome Research, 2015 - karger.com
Abstract 5S and 45S rDNA sites are the best mapped chromosome regions in eukaryotic
chromosomes. In this work, a database was built gathering information about the position …

Adding color to a century‐old enigma: multi‐color chromosome identification unravels the autotriploid nature of saffron (Crocus sativus) as a hybrid of wild Crocus …

T Schmidt, T Heitkam, S Liedtke, V Schubert… - New …, 2019 - Wiley Online Library
Saffron crocus (Crocus sativus) is the source of the most expensive spice of the world,
produced from manually harvested stigmas, thus serving as a cash crop for rural …

Satellite DNA in Vicia faba is characterized by remarkable diversity in its sequence composition, association with centromeres, and replication timing

L Ávila Robledillo, A Koblížková, P Novák… - Scientific reports, 2018 - nature.com
Satellite DNA, a class of repetitive sequences forming long arrays of tandemly repeated
units, represents substantial portions of many plant genomes yet remains poorly …

The More the Merrier: Recent Hybridization and Polyploidy in Cardamine

T Mandáková, A Kovařík, J Zozomová-Lihová… - The Plant …, 2013 - academic.oup.com
This article describes the use of cytogenomic and molecular approaches to explore the
origin and evolution of Cardamine schulzii, a textbook example of a recent allopolyploid, in …

Large vs small genomes in Passiflora: the influence of the mobilome and the satellitome

M Sader, M Vaio, LA Cauz-Santos, MC Dornelas… - Planta, 2021 - Springer
Main conclusions While two lineages of retrotransposons were more abundant in larger
Passiflora genomes, the satellitome was more diverse and abundant in the smallest genome …