Water in nanopores and biological channels: a molecular simulation perspective
CI Lynch, S Rao, MSP Sansom - Chemical reviews, 2020 - ACS Publications
This Review explores the dynamic behavior of water within nanopores and biological
channels in lipid bilayer membranes. We focus on molecular simulation studies, alongside …
channels in lipid bilayer membranes. We focus on molecular simulation studies, alongside …
Put a cork in it: Plugging the M2 viral ion channel to sink influenza
The ongoing threat of seasonal and pandemic influenza to human health requires antivirals
that can effectively supplement existing vaccination strategies. The M2 protein of influenza A …
that can effectively supplement existing vaccination strategies. The M2 protein of influenza A …
Hybrid Pyridine–Pyridone Foldamer Channels as M2‐Like Artificial Proton Channels
Currently, completely abiotic channel systems that concurrently reproduce the high
selectivity and high permeation rate of natural protein channels are rare. Here, we provide …
selectivity and high permeation rate of natural protein channels are rare. Here, we provide …
[HTML][HTML] Decoding the 2D IR spectrum of the aqueous proton with high-level VSCF/VCI calculations
The aqueous proton is a common and long-studied species in chemistry, yet there is
currently intense interest devoted to understanding its hydration structure and transport …
currently intense interest devoted to understanding its hydration structure and transport …
Activation of the influenza B M2 proton channel (BM2)
Influenza B viruses have cocirculated during most seasonal flu epidemics and can cause
significant human morbidity and mortality due to their rapid mutation, emerging drug …
significant human morbidity and mortality due to their rapid mutation, emerging drug …
Inhibition Mechanism of Anti-TB Drug SQ109: Allosteric Inhibition of TMM Translocation of Mycobacterium Tuberculosis MmpL3 Transporter
J Carbone, NJ Paradis, L Bennet… - Journal of chemical …, 2023 - ACS Publications
The mycolic acid transporter MmpL3 is driven by proton motive forces (PMF) and functions
via an antiport mechanism. Although the crystal structures of the Mycobacterium smegmatis …
via an antiport mechanism. Although the crystal structures of the Mycobacterium smegmatis …
Heterocyclic inhibitors of viroporins in the design of antiviral compounds
VA Shiryaev, YN Klimochkin - Chemistry of heterocyclic compounds, 2020 - Springer
Ion channels of viruses (viroporins) represent a common type of protein targets for drugs.
The relative simplicity of channel architecture allows convenient computational modeling …
The relative simplicity of channel architecture allows convenient computational modeling …
Understanding the multifaceted mechanism of Compound I formation in unspecific peroxygenases through multiscale simulations
GJ Costa, R Liang - The Journal of Physical Chemistry B, 2023 - ACS Publications
Unspecific peroxygenases (UPOs) can selectively oxyfunctionalize unactivated
hydrocarbons by using peroxides under mild conditions. They circumvent the oxygen …
hydrocarbons by using peroxides under mild conditions. They circumvent the oxygen …
Molecular dynamics simulation of complex reactivity with the rapid approach for proton transport and other reactions (RAPTOR) software package
Simulating chemically reactive phenomena such as proton transport on nanosecond to
microsecond and beyond time scales is a challenging task. Ab initio methods are unable to …
microsecond and beyond time scales is a challenging task. Ab initio methods are unable to …
Water orientation and dynamics in the closed and open influenza B virus M2 proton channels
The influenza B M2 protein forms a water-filled tetrameric channel to conduct protons across
the lipid membrane. To understand how channel water mediates proton transport, we have …
the lipid membrane. To understand how channel water mediates proton transport, we have …