Deciphering molecular interactions by proximity labeling

W Qin, KF Cho, PE Cavanagh, AY Ting - Nature methods, 2021 - nature.com
Many biological processes are executed and regulated through the molecular interactions of
proteins and nucleic acids. Proximity labeling (PL) is a technology for tagging the …

Auxin response factors are keys to the many auxin doors

C Cancé, R Martin‐Arevalillo, K Boubekeur… - New …, 2022 - Wiley Online Library
In plants, most developmental programs depend on the action of auxin. The best described
model of the auxin signaling pathway, which explains most, but not all, of the auxin …

Plant transcription factors—being in the right place with the right company

L Strader, D Weijers, D Wagner - Current opinion in plant biology, 2022 - Elsevier
Transcriptional regulation underlies many of the growth and developmental processes that
shape plants as well as their adaptation to their environment. Key to transcriptional control …

Diversity of plant heat shock factors: regulation, interactions, and functions

N Andrási, A Pettkó-Szandtner… - Journal of Experimental …, 2021 - academic.oup.com
Plants heat shock factors (HSFs) are encoded by large gene families with variable structure,
expression, and function. HSFs are components of complex signaling systems that control …

Proximity labeling in plants

SL Xu, R Shrestha, SS Karunadasa… - Annual review of plant …, 2023 - annualreviews.org
Proteins are workhorses in the cell; they form stable and more often dynamic, transient
protein–protein interactions, assemblies, and networks and have an intimate interplay with …

MYB21 interacts with MYC2 to control the expression of terpene synthase genes in flowers of Freesia hybrida and Arabidopsis thaliana

Z Yang, Y Li, F Gao, W Jin, S Li, S Kimani… - Journal of …, 2020 - academic.oup.com
Previously, linalool was found to be the most abundant component among the cocktail of
volatiles released from flowers of Freesia hybrida. Linalool formation is catalysed by …

Circadian entrainment in Arabidopsis by the sugar-responsive transcription factor bZIP63

A Frank, CC Matiolli, AJC Viana, TJ Hearn, J Kusakina… - Current Biology, 2018 - cell.com
Synchronization of circadian clocks to the day-night cycle ensures the correct timing of
biological events. This entrainment process is essential to ensure that the phase of the …

The iron deficiency response in Arabidopsis thaliana requires the phosphorylated transcription factor URI

SA Kim, IS LaCroix, SA Gerber… - Proceedings of the …, 2019 - National Acad Sciences
Iron is an essential nutrient for plants, but excess iron is toxic due to its catalytic role in the
formation of hydroxyl radicals. Thus, iron uptake is highly regulated and induced only under …

Massively parallel measurement of protein–protein interactions by sequencing using MP3-seq

A Baryshev, A La Fleur, B Groves, C Michel… - Nature chemical …, 2024 - nature.com
Protein–protein interactions (PPIs) regulate many cellular processes and engineered PPIs
have cell and gene therapy applications. Here, we introduce massively parallel PPI …

Network Walking charts transcriptional dynamics of nitrogen signaling by integrating validated and predicted genome-wide interactions

MD Brooks, J Cirrone, AV Pasquino, JM Alvarez… - Nature …, 2019 - nature.com
Charting a temporal path in gene networks requires linking early transcription factor (TF)-
triggered events to downstream effects. We scale-up a cell-based TF-perturbation assay to …