[HTML][HTML] Changes in genome architecture and transcriptional dynamics progress independently of sensory experience during post-natal brain development

L Tan, W Ma, H Wu, Y Zheng, D Xing, R Chen, X Li… - Cell, 2021 - cell.com
Both transcription and three-dimensional (3D) architecture of the mammalian genome play
critical roles in neurodevelopment and its disorders. However, 3D genome structures of …

Independent component analysis based gene co-expression network inference (ICAnet) to decipher functional modules for better single-cell clustering and batch …

W Wang, H Tan, M Sun, Y Han, W Chen… - Nucleic acids …, 2021 - academic.oup.com
With the tremendous increase of publicly available single-cell RNA-sequencing (scRNA-
seq) datasets, bioinformatics methods based on gene co-expression network are becoming …

Correlated Protein Modules Revealing Functional Coordination of Interacting Proteins Are Detected by Single-Cell Proteomics

M Hu, Y Zhang, Y Yuan, W Ma, Y Zheng… - The Journal of …, 2023 - ACS Publications
Single-cell proteomics has attracted a lot of attention in recent years because it offers more
functional relevance than single-cell transcriptomics. However, most work to date has …

Correlated protein modules reflecting functional coordination of interacting proteins are uncovered by single-cell proteomics

M Hu, Y Zhang, Y Yuan, W Ma, Y Zheng, Q Gu, XS Xie - bioRxiv, 2022 - biorxiv.org
Single-cell proteomics has attracted a lot of attention in recent years because it offers more
functional relevance than single-cell transcriptomics. However, most work to date focused on …