[HTML][HTML] Bacterial alginate metabolism: an important pathway for bioconversion of brown algae
L Zhang, X Li, X Zhang, Y Li, L Wang - Biotechnology for Biofuels, 2021 - Springer
Brown macroalgae have attracted great attention as an alternative feedstock for biorefining.
Although direct conversion of ethanol from alginates (major components of brown …
Although direct conversion of ethanol from alginates (major components of brown …
[HTML][HTML] Beyond 16S rRNA community profiling: intra-species diversity in the gut microbiota
KM Ellegaard, P Engel - Frontiers in microbiology, 2016 - frontiersin.org
Interactions with microbes affect many aspects of animal biology, including immune system
development, nutrition and health. In vertebrates, the gut microbiota is dominated by a small …
development, nutrition and health. In vertebrates, the gut microbiota is dominated by a small …
Single-Cell Genomics Reveals Hundreds of Coexisting Subpopulations in Wild Prochlorococcus
N Kashtan, SE Roggensack, S Rodrigue… - Science, 2014 - science.org
Extensive genomic diversity within coexisting members of a microbial species has been
revealed through selected cultured isolates and metagenomic assemblies. Yet, the cell-by …
revealed through selected cultured isolates and metagenomic assemblies. Yet, the cell-by …
[HTML][HTML] Expanding the marine virosphere using metagenomics
Viruses infecting prokaryotic cells (phages) are the most abundant entities of the biosphere
and contain a largely uncharted wealth of genomic diversity. They play a critical role in the …
and contain a largely uncharted wealth of genomic diversity. They play a critical role in the …
[HTML][HTML] Fine metagenomic profile of the Mediterranean stratified and mixed water columns revealed by assembly and recruitment
Background The photic zone of aquatic habitats is subjected to strong physicochemical
gradients. To analyze the fine-scale variations in the marine microbiome, we collected seven …
gradients. To analyze the fine-scale variations in the marine microbiome, we collected seven …
Impact of homologous recombination on the evolution of prokaryotic core genomes
Homologous recombination (HR) enables the exchange of genetic material between and
within species. Recent studies suggest that this process plays a major role in the …
within species. Recent studies suggest that this process plays a major role in the …
[HTML][HTML] Enhanced recovery of microbial genes and genomes from a marine water column using long-read metagenomics
JM Haro-Moreno, M López-Pérez… - Frontiers in …, 2021 - frontiersin.org
Third-generation sequencing has penetrated little in metagenomics due to the high error
rate and dependence for assembly on short-read designed bioinformatics. However, second …
rate and dependence for assembly on short-read designed bioinformatics. However, second …
Flexible genomic islands as drivers of genome evolution
F Rodriguez-Valera, AB Martin-Cuadrado… - Current opinion in …, 2016 - Elsevier
Highlights•Prokaryotic populations are composed of multiple and diverse clonal
lineages.•These lineages carry different flexible gene pools, many collected in genomic …
lineages.•These lineages carry different flexible gene pools, many collected in genomic …
Different utilization of alginate and other algal polysaccharides by marine Alteromonas macleodii ecotypes
AM Neumann, JP Balmonte, M Berger… - Environmental …, 2015 - Wiley Online Library
The marine bacterium A lteromonas macleodii is a copiotrophic r‐strategist, but little is
known about its potential to degrade polysaccharides. Here, we studied the degradation of …
known about its potential to degrade polysaccharides. Here, we studied the degradation of …
[HTML][HTML] Genomic, metabolic and phenotypic variability shapes ecological differentiation and intraspecies interactions of Alteromonas macleodii
H Koch, N Germscheid, HM Freese… - Scientific reports, 2020 - nature.com
Ecological differentiation between strains of bacterial species is shaped by genomic and
metabolic variability. However, connecting genotypes to ecological niches remains a major …
metabolic variability. However, connecting genotypes to ecological niches remains a major …