Tumor microenvironment in glioblastoma: Current and emerging concepts

P Sharma, A Aaroe, J Liang… - Neuro-Oncology …, 2023 - academic.oup.com
Glioblastoma (GBM) tumor microenvironment (TME) is a highly heterogeneous and complex
system, which in addition to cancer cells, consists of various resident brain and immune cells …

Recent advances in cancer fusion transcript detection

R Dorney, BP Dhungel, JEJ Rasko… - Briefings in …, 2023 - academic.oup.com
Extensive investigation of gene fusions in cancer has led to the discovery of novel
biomarkers and therapeutic targets. To date, most studies have neglected chromosomal …

A systematic benchmark of Nanopore long read RNA sequencing for transcript level analysis in human cell lines

Y Chen, NM Davidson, YK Wan, H Patel, F Yao… - BioRxiv, 2021 - biorxiv.org
The human genome contains more than 200,000 gene isoforms. However, different isoforms
can be highly similar, and with an average length of 1.5 kb remain difficult to study with short …

JAFFAL: detecting fusion genes with long-read transcriptome sequencing

NM Davidson, Y Chen, T Sadras, GL Ryland… - Genome biology, 2022 - Springer
In cancer, fusions are important diagnostic markers and targets for therapy. Long-read
transcriptome sequencing allows the discovery of fusions with their full-length isoform …

An alternative pipeline for glioblastoma therapeutics: a systematic review of drug repurposing in glioblastoma

SB Lyne, B Yamini - Cancers, 2021 - mdpi.com
Simple Summary Glioblastoma is a devastating malignancy that has continued to prove
resistant to a variety of therapeutics. No new systemic therapy has been approved for use …

Comprehensive analysis of full-length transcripts reveals novel splicing abnormalities and oncogenic transcripts in liver cancer

H Kiyose, H Nakagawa, A Ono, H Aikata, M Ueno… - PLoS …, 2022 - journals.plos.org
Genes generate transcripts of various functions by alternative splicing. However, in most
transcriptome studies, short-reads sequencing technologies (next-generation sequencers) …

Detection of gene mutations and gene–gene fusions in circulating cell‐free DNA of glioblastoma patients: an avenue for clinically relevant diagnostic analysis

V Palande, T Siegal, R Detroja… - Molecular …, 2022 - Wiley Online Library
Glioblastoma (GBM) is the most common type of glioma and is uniformly fatal. Currently,
tumour heterogeneity and mutation acquisition are major impedances for tailoring …

A roadmap toward the definition of actionable tumor-specific antigens

R Minati, C Perreault, P Thibault - Frontiers in Immunology, 2020 - frontiersin.org
The search for tumor-specific antigens (TSAs) has considerably accelerated during the past
decade due to the improvement of proteogenomic detection methods. This provides new …

Androgen-driven fusion genes and chimeric transcripts in prostate cancer

M Scaravilli, S Koivukoski, L Latonen - Frontiers in Cell and …, 2021 - frontiersin.org
Androgens are steroid hormones governing the male reproductive development and
function. As such, androgens and the key mediator of their effects, androgen receptor (AR) …

[HTML][HTML] Cancer genomics

MA Fonseca-Montaño, S Blancas… - Archives of Medical …, 2022 - Elsevier
In the past decade, genomics has fundamentally changed our view of cancer biology,
allowing comprehensive analyses of mutations, copy number alterations, structural variants …