Recent advances in the prediction of protein structural classes: Feature descriptors and machine learning algorithms

L Zhu, MD Davari, W Li - Crystals, 2021 - mdpi.com
In the postgenomic age, rapid growth in the number of sequence-known proteins has been
accompanied by much slower growth in the number of structure-known proteins (as a result …

SCPRED: accurate prediction of protein structural class for sequences of twilight-zone similarity with predicting sequences

L Kurgan, K Cios, K Chen - BMC bioinformatics, 2008 - Springer
Background Protein structure prediction methods provide accurate results when a
homologous protein is predicted, while poorer predictions are obtained in the absence of …

Prediction of protein structural classes by Chou's pseudo amino acid composition: approached using continuous wavelet transform and principal component analysis

ZC Li, XB Zhou, Z Dai, XY Zou - Amino acids, 2009 - Springer
A prior knowledge of protein structural classes can provide useful information about its
overall structure, so it is very important for quick and accurate determination of protein …

The use of artificial neural networks and multiple linear regression to predict rate of medical waste generation

S Jahandideh, S Jahandideh, EB Asadabadi… - Waste management, 2009 - Elsevier
Prediction of the amount of hospital waste production will be helpful in the storage,
transportation and disposal of hospital waste management. Based on this fact, two predictor …

Modular prediction of protein structural classes from sequences of twilight-zone identity with predicting sequences

MJ Mizianty, L Kurgan - BMC bioinformatics, 2009 - Springer
Background Knowledge of structural class is used by numerous methods for identification of
structural/functional characteristics of proteins and could be used for the detection of remote …

A combination of feature extraction methods with an ensemble of different classifiers for protein structural class prediction problem

A Dehzangi, K Paliwal, A Sharma… - … ACM transactions on …, 2013 - ieeexplore.ieee.org
Better understanding of structural class of a given protein reveals important information
about its overall folding type and its domain. It can also be directly used to provide critical …

The prediction of protein structural class using averaged chemical shifts

H Lin, C Ding, Q Song, P Yang, H Ding… - Journal of …, 2012 - Taylor & Francis
Knowledge of protein structural class can provide important information about its folding
patterns. Many approaches have been developed for the prediction of protein structural …

Prediction of protein structural class for the twilight zone sequences

L Kurgan, K Chen - Biochemical and Biophysical Research …, 2007 - Elsevier
Structural class characterizes the overall folding type of a protein or its domain. This paper
develops an accurate method for in silico prediction of structural classes from low homology …

A segmentation-based method to extract structural and evolutionary features for protein fold recognition

A Dehzangi, K Paliwal, J Lyons… - … /ACM Transactions on …, 2014 - ieeexplore.ieee.org
Protein fold recognition (PFR) is considered as an important step towards the protein
structure prediction problem. Despite all the efforts that have been made so far, finding an …

Secondary structure-based assignment of the protein structural classes

LA Kurgan, T Zhang, H Zhang, S Shen, J Ruan - Amino acids, 2008 - Springer
Structural class categorizes proteins based on the amount and arrangement of the
constituent secondary structures. The knowledge of structural classes is applied in …