Regulation and functions of non-m6A mRNA modifications

H Sun, K Li, C Liu, C Yi - Nature Reviews Molecular Cell Biology, 2023 - nature.com
Nucleobase modifications are prevalent in eukaryotic mRNA and their discovery has
resulted in the emergence of epitranscriptomics as a research field. The most abundant …

RNA modifications in physiology and disease: towards clinical applications

S Delaunay, M Helm, M Frye - Nature Reviews Genetics, 2024 - nature.com
The ability of chemical modifications of single nucleotides to alter the electrostatic charge,
hydrophobic surface and base pairing of RNA molecules is exploited for the clinical use of …

mRNA regulation by RNA modifications

WV Gilbert, S Nachtergaele - Annual Review of Biochemistry, 2023 - annualreviews.org
Chemical modifications on mRNA represent a critical layer of gene expression regulation.
Research in this area has continued to accelerate over the last decade, as more …

MODOMICS: a database of RNA modifications and related information. 2023 update

A Cappannini, A Ray, E Purta, S Mukherjee… - Nucleic Acids …, 2024 - academic.oup.com
The MODOMICS database was updated with recent data and now includes new data types
related to RNA modifications. Changes to the database include an expanded modification …

Systematic comparison of tools used for m6A mapping from nanopore direct RNA sequencing

ZD Zhong, YY Xie, HX Chen, YL Lan, XH Liu… - Nature …, 2023 - nature.com
Abstract N6-methyladenosine (m6A) has been increasingly recognized as a new and
important regulator of gene expression. To date, transcriptome-wide m6A detection primarily …

METTL1 promotes tumorigenesis through tRNA-derived fragment biogenesis in prostate cancer

R García-Vílchez, AM Añazco-Guenkova, S Dietmann… - Molecular cancer, 2023 - Springer
Newly growing evidence highlights the essential role that epitranscriptomic marks play in the
development of many cancers; however, little is known about the role and implications of …

The tRNA identity landscape for aminoacylation and beyond

R Giegé, G Eriani - Nucleic Acids Research, 2023 - academic.oup.com
Abstract tRNAs are key partners in ribosome-dependent protein synthesis. This process is
highly dependent on the fidelity of tRNA aminoacylation by aminoacyl-tRNA synthetases …

QKI shuttles internal m7G-modified transcripts into stress granules and modulates mRNA metabolism

Z Zhao, Y Qing, L Dong, L Han, D Wu, Y Li, W Li, J Xue… - Cell, 2023 - cell.com
Summary N 7-methylguanosine (m 7 G) modification, routinely occurring at mRNA 5′ cap
or within tRNAs/rRNAs, also exists internally in messenger RNAs (mRNAs). Although m 7 G …

Quantitative profiling of pseudouridylation landscape in the human transcriptome

M Zhang, Z Jiang, Y Ma, W Liu, Y Zhuang, B Lu… - Nature chemical …, 2023 - nature.com
Pseudouridine (Ψ) is an abundant post-transcriptional RNA modification in ncRNA and
mRNA. However, stoichiometric measurement of individual Ψ sites in human transcriptome …

DirectRMDB: a database of post-transcriptional RNA modifications unveiled from direct RNA sequencing technology

Y Zhang, J Jiang, J Ma, Z Wei, Y Wang… - Nucleic Acids …, 2023 - academic.oup.com
With advanced technologies to map RNA modifications, our understanding of them has
been revolutionized, and they are seen to be far more widespread and important than …