Overlapping genes in natural and engineered genomes

BW Wright, MP Molloy, PR Jaschke - Nature Reviews Genetics, 2022 - nature.com
Modern genome-scale methods that identify new genes, such as proteogenomics and
ribosome profiling, have revealed, to the surprise of many, that overlap in genes, open …

Unconventional viral gene expression mechanisms as therapeutic targets

JSY Ho, Z Zhu, I Marazzi - Nature, 2021 - nature.com
Unlike the human genome that comprises mostly noncoding and regulatory sequences,
viruses have evolved under the constraints of maintaining a small genome size while …

Dissecting human population variation in single-cell responses to SARS-CoV-2

Y Aquino, A Bisiaux, Z Li, M O'Neill, J Mendoza-Revilla… - Nature, 2023 - nature.com
Humans display substantial interindividual clinical variability after SARS-CoV-2 infection,–,
the genetic and immunological basis of which has begun to be deciphered. However, the …

Translation initiation landscape profiling reveals hidden open-reading frames required for the pathogenesis of tomato yellow leaf curl Thailand virus

CW Chiu, YR Li, CY Lin, HH Yeh, MJ Liu - The Plant Cell, 2022 - academic.oup.com
Plant viruses with densely packed genomes employ noncanonical translational strategies to
increase the coding capacity for viral function. However, the diverse translational strategies …

Single-cell and bulk RNA-sequencing reveal differences in monocyte susceptibility to influenza A virus infection between Africans and Europeans

MB O'neill, H Quach, J Pothlichet, Y Aquino… - Frontiers in …, 2021 - frontiersin.org
There is considerable inter-individual and inter-population variability in response to viruses.
The potential of monocytes to elicit type-I interferon responses has attracted attention to their …

Translation initiation site profiling reveals widespread synthesis of non-AUG-initiated protein isoforms in yeast

AR Eisenberg, AL Higdon, I Hollerer, AP Fields… - Cell systems, 2020 - cell.com
Genomic analyses in budding yeast have helped define the foundational principles of
eukaryotic gene expression. However, in the absence of empirical methods for defining …

[HTML][HTML] Hybrid gene origination creates human-virus chimeric proteins during infection

JSY Ho, M Angel, Y Ma, E Sloan, G Wang… - Cell, 2020 - cell.com
RNA viruses are a major human health threat. The life cycles of many highly pathogenic
RNA viruses like influenza A virus (IAV) and Lassa virus depends on host mRNA, because …

Peptide channeling: the key to MHC class I immunosurveillance?

JW Yewdell, D Dersh, R Fåhraeus - Trends in cell biology, 2019 - cell.com
MHC class I presentation of short peptides enables CD8+ T cell (T CD8+)
immunosurveillance of tumors and intracellular pathogens. A key feature of the class I …

Persistence of ambigrammatic narnaviruses requires translation of the reverse open reading frame

H Retallack, KD Popova, MT Laurie… - Journal of …, 2021 - Am Soc Microbiol
Narnaviruses are RNA viruses detected in diverse fungi, plants, protists, arthropods, and
nematodes. Though initially described as simple single-gene nonsegmented viruses …

Antiviral activity of iridoid glycosides extracted from Fructus Gardeniae against influenza A virus by PACT-dependent suppression of viral RNA replication

S Guo, L Bao, C Li, J Sun, R Zhao, X Cui - Scientific Reports, 2020 - nature.com
Epidemic and pandemic influenza A virus (IAV) poses a significant threat to human
populations worldwide. Iridoid glycosides are principal bioactive components from the …