[HTML][HTML] Allostery in disease and in drug discovery

R Nussinov, CJ Tsai - Cell, 2013 - cell.com
Allostery is largely associated with conformational and functional transitions in individual
proteins. This concept can be extended to consider the impact of conformational …

Genome architecture: domain organization of interphase chromosomes

WA Bickmore, B Van Steensel - Cell, 2013 - cell.com
The architecture of interphase chromosomes is important for the regulation of gene
expression and genome maintenance. Chromosomes are linearly segmented into hundreds …

High-resolution TADs reveal DNA sequences underlying genome organization in flies

F Ramírez, V Bhardwaj, L Arrigoni, KC Lam… - Nature …, 2018 - nature.com
Despite an abundance of new studies about topologically associating domains (TADs), the
role of genetic information in TAD formation is still not fully understood. Here we use our …

[HTML][HTML] Chromosome conformation capture and beyond: toward an integrative view of chromosome structure and function

RP McCord, N Kaplan, L Giorgetti - Molecular cell, 2020 - cell.com
Rapidly developing technologies have recently fueled an exciting era of discovery in the
field of chromosome structure and nuclear organization. In addition to chromosome …

Chromosome territories

T Cremer, M Cremer - Cold Spring Harbor perspectives …, 2010 - cshperspectives.cshlp.org
Chromosome territories (CTs) constitute a major feature of nuclear architecture. In a brief
statement, the possible contribution of nuclear architecture studies to the field of …

Chromatin-associated RNAs as facilitators of functional genomic interactions

X Li, XD Fu - Nature Reviews Genetics, 2019 - nature.com
Mammalian genomes are extensively transcribed, which produces a large number of both
coding and non-coding transcripts. Various RNAs are physically associated with chromatin …

[HTML][HTML] Functional and mechanistic diversity of distal transcription enhancers

M Bulger, M Groudine - Cell, 2011 - cell.com
Biological differences among metazoans and between cell types in a given organism arise
in large part due to differences in gene expression patterns. Gene-distal enhancers are key …

Biogenesis and function of nuclear bodies

YS Mao, B Zhang, DL Spector - Trends in Genetics, 2011 - cell.com
Nuclear bodies including nucleoli, Cajal bodies, nuclear speckles, Polycomb bodies, and
paraspeckles are membraneless subnuclear organelles. They are present at steady-state …

A large fraction of extragenic RNA pol II transcription sites overlap enhancers

F De Santa, I Barozzi, F Mietton, S Ghisletti… - PLoS …, 2010 - journals.plos.org
Mammalian genomes are pervasively transcribed outside mapped protein-coding genes.
One class of extragenic transcription products is represented by long non-coding RNAs …

Real-time dynamics of RNA polymerase II clustering in live human cells

II Cisse, I Izeddin, SZ Causse, L Boudarene, A Senecal… - Science, 2013 - science.org
Transcription is reported to be spatially compartmentalized in nuclear transcription factories
with clusters of RNA polymerase II (Pol II). However, little is known about when these foci …