From 3D point‐cloud data to explainable geometric deep learning: State‐of‐the‐art and future challenges

A Saranti, B Pfeifer, C Gollob… - … : Data Mining and …, 2024 - Wiley Online Library
We present an exciting journey from 3D point‐cloud data (PCD) to the state of the art in
graph neural networks (GNNs) and their evolution with explainable artificial intelligence …

Recent Advances in Machine Learning‐Assisted Multiscale Design of Energy Materials

B Mortazavi - Advanced Energy Materials, 2024 - Wiley Online Library
This review highlights recent advances in machine learning (ML)‐assisted design of energy
materials. Initially, ML algorithms were successfully applied to screen materials databases …

Has generative artificial intelligence solved inverse materials design?

H Park, Z Li, A Walsh - Matter, 2024 - cell.com
The directed design and discovery of compounds with pre-determined properties is a long-
standing challenge in materials research. We provide a perspective on progress toward …

3DReact: Geometric Deep Learning for Chemical Reactions

P van Gerwen, KR Briling, C Bunne… - Journal of Chemical …, 2024 - ACS Publications
Geometric deep learning models, which incorporate the relevant molecular symmetries
within the neural network architecture, have considerably improved the accuracy and data …

Descriptor-Free Collective Variables from Geometric Graph Neural Networks

J Zhang, L Bonati, E Trizio, O Zhang… - Journal of Chemical …, 2024 - ACS Publications
Enhanced sampling simulations make the computational study of rare events feasible. A
large family of such methods crucially depends on the definition of some collective variables …

[PDF][PDF] Open materials 2024 (omat24) inorganic materials dataset and models

L Barroso-Luque, M Shuaibi, X Fu, BM Wood… - arXiv preprint arXiv …, 2024 - rivista.ai
Date: October 18, 2024 Correspondence: L. Barroso-Luque (lbluque@ meta. com), CL
Zitnick (zitnick@ meta. com), Z. Ulissi (zulissi@ meta. com) Code: https://github. com/FAIR …

TorchMD-Net 2.0: Fast Neural Network Potentials for Molecular Simulations

RP Pelaez, G Simeon, R Galvelis… - Journal of Chemical …, 2024 - ACS Publications
Achieving a balance between computational speed, prediction accuracy, and universal
applicability in molecular simulations has been a persistent challenge. This paper presents …

gRNAde: Geometric Deep Learning for 3D RNA inverse design

CK Joshi, AR Jamasb, R Viñas, C Harris, S Mathis… - …, 2024 - pmc.ncbi.nlm.nih.gov
Computational RNA design tasks are often posed as inverse problems, where sequences
are designed based on adopting a single desired secondary structure without considering …

Full-atom peptide design with geometric latent diffusion

X Kong, Y Jia, W Huang, Y Liu - arXiv preprint arXiv:2402.13555, 2024 - arxiv.org
Peptide design plays a pivotal role in therapeutics, allowing brand new possibility to
leverage target binding sites that are previously undruggable. Most existing methods are …

Geometric deep learning for molecular property predictions with chemical accuracy across chemical space

MR Dobbelaere, I Lengyel, CV Stevens… - Journal of …, 2024 - Springer
Chemical engineers heavily rely on precise knowledge of physicochemical properties to
model chemical processes. Despite the growing popularity of deep learning, it is only rarely …