Barcodes: the persistent topology of data

R Ghrist - Bulletin of the American Mathematical Society, 2008 - ams.org
This article surveys recent work of Carlsson and collaborators on applications of
computational algebraic topology to problems of feature detection and shape recognition in …

Persistence homology of networks: methods and applications

ME Aktas, E Akbas, AE Fatmaoui - Applied Network Science, 2019 - Springer
Abstract Information networks are becoming increasingly popular to capture complex
relationships across various disciplines, such as social networks, citation networks, and …

TopologyNet: Topology based deep convolutional and multi-task neural networks for biomolecular property predictions

Z Cang, GW Wei - PLoS computational biology, 2017 - journals.plos.org
Although deep learning approaches have had tremendous success in image, video and
audio processing, computer vision, and speech recognition, their applications to three …

Topology and data

G Carlsson - Bulletin of the American Mathematical Society, 2009 - ams.org
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Mathematical Society American Mathematical Society MathSciNet Bookstore Publications …

Computing persistent homology

A Zomorodian, G Carlsson - … of the twentieth annual symposium on …, 2004 - dl.acm.org
We study the homology of a filtered d-dimensional simplicial complex K as a single
algebraic entity and establish a correspondence that provides a simple description over …

Representability of algebraic topology for biomolecules in machine learning based scoring and virtual screening

Z Cang, L Mu, GW Wei - PLoS computational biology, 2018 - journals.plos.org
This work introduces a number of algebraic topology approaches, including multi-
component persistent homology, multi-level persistent homology, and electrostatic …

Stability of persistence diagrams

D Cohen-Steiner, H Edelsbrunner, J Harer - Proceedings of the twenty …, 2005 - dl.acm.org
The persistence diagram of a real-valued function on a topological space is a multiset of
points in the extended plane. We prove that under mild assumptions on the function, the …

Persistent homology-a survey

H Edelsbrunner, J Harer - Contemporary mathematics, 2008 - books.google.com
Persistent homology is an algebraic tool for measuring topological features of shapes and
functions. It casts the multi-scale organization we frequently observe in nature into a …

The theory of multidimensional persistence

G Carlsson, A Zomorodian - Proceedings of the twenty-third annual …, 2007 - dl.acm.org
Persistent homology captures the topology of a filtration-a one-parameter family of
increasing spaces-in terms of a complete discrete invariant. This invariant is a multiset of …

Quantum algorithms for topological and geometric analysis of data

S Lloyd, S Garnerone, P Zanardi - Nature communications, 2016 - nature.com
Extracting useful information from large data sets can be a daunting task. Topological
methods for analysing data sets provide a powerful technique for extracting such …