Harnessing the power of RADseq for ecological and evolutionary genomics
High-throughput techniques based on restriction site-associated DNA sequencing (RADseq)
are enabling the low-cost discovery and genotyping of thousands of genetic markers for any …
are enabling the low-cost discovery and genotyping of thousands of genetic markers for any …
Interpreting the genomic landscape of speciation: a road map for finding barriers to gene flow
Speciation, the evolution of reproductive isolation among populations, is continuous,
complex, and involves multiple, interacting barriers. Until it is complete, the effects of this …
complex, and involves multiple, interacting barriers. Until it is complete, the effects of this …
Lost in parameter space: a road map for stacks
JR Paris, JR Stevens… - Methods in Ecology and …, 2017 - Wiley Online Library
Restriction site‐Associated DNA sequencing (RAD‐seq) has become a widely adopted
method for genotyping populations of model and non‐model organisms. Generating a …
method for genotyping populations of model and non‐model organisms. Generating a …
Stacks: an analysis tool set for population genomics
Massively parallel short‐read sequencing technologies, coupled with powerful software
platforms, are enabling investigators to analyse tens of thousands of genetic markers. This …
platforms, are enabling investigators to analyse tens of thousands of genetic markers. This …
Breaking RAD: An evaluation of the utility of restriction site‐associated DNA sequencing for genome scans of adaptation
Understanding how and why populations evolve is of fundamental importance to molecular
ecology. Restriction site‐associated DNA sequencing (RAD seq), a popular reduced …
ecology. Restriction site‐associated DNA sequencing (RAD seq), a popular reduced …
RAD capture (Rapture): flexible and efficient sequence-based genotyping
Massively parallel sequencing has revolutionized many areas of biology, but sequencing
large amounts of DNA in many individuals is cost-prohibitive and unnecessary for many …
large amounts of DNA in many individuals is cost-prohibitive and unnecessary for many …
These aren't the loci you'e looking for: Principles of effective SNP filtering for molecular ecologists
Sequencing reduced‐representation libraries of restriction site‐associated DNA (RAD seq)
to identify single nucleotide polymorphisms (SNP s) is quickly becoming a standard …
to identify single nucleotide polymorphisms (SNP s) is quickly becoming a standard …
Bioinformatic processing of RAD‐seq data dramatically impacts downstream population genetic inference
Restriction site‐associated DNA sequencing (RAD‐seq) provides high‐resolution
population genomic data at low cost, and has become an important component in ecological …
population genomic data at low cost, and has become an important component in ecological …
[HTML][HTML] Crop breeding chips and genotyping platforms: progress, challenges, and perspectives
There is a rapidly rising trend in the development and application of molecular marker
assays for gene mapping and discovery in field crops and trees. Thus far, more than 50 SNP …
assays for gene mapping and discovery in field crops and trees. Thus far, more than 50 SNP …
Genotyping‐by‐sequencing approaches to characterize crop genomes: choosing the right tool for the right application
In the last decade, the revolution in sequencing technologies has deeply impacted crop
genotyping practice. New methods allowing rapid, high‐throughput genotyping of entire …
genotyping practice. New methods allowing rapid, high‐throughput genotyping of entire …