The stochastic nature of genome organization and function
Genomes have complex three-dimensional structures. High-resolution population-based
biochemical studies over the last decade have painted a mostly static picture of the genome …
biochemical studies over the last decade have painted a mostly static picture of the genome …
Genome accessibility dynamics in response to phosphate limitation is controlled by the PHR1 family of transcription factors in Arabidopsis
AC Barragán-Rosillo… - Proceedings of the …, 2021 - National Acad Sciences
As phosphorus is one of the most limiting nutrients in many natural and agricultural
ecosystems, plants have evolved strategies that cope with its scarcity. Genetic approaches …
ecosystems, plants have evolved strategies that cope with its scarcity. Genetic approaches …
[HTML][HTML] Chromatin Organization and Function in Drosophila
P Llorens-Giralt, C Camilleri-Robles, M Corominas… - Cells, 2021 - mdpi.com
Eukaryotic genomes are packaged into high-order chromatin structures organized in
discrete territories inside the cell nucleus, which is surrounded by the nuclear envelope …
discrete territories inside the cell nucleus, which is surrounded by the nuclear envelope …
Topologically associating domains and their role in the evolution of genome structure and function in Drosophila
Topologically associating domains (TADs) were recently identified as fundamental units of
three-dimensional eukaryotic genomic organization, although our knowledge of the …
three-dimensional eukaryotic genomic organization, although our knowledge of the …
Genome organization regulates nuclear pore complex formation and promotes differentiation during Drosophila oogenesis
Genome organization can regulate gene expression and promote cell fate transitions. The
differentiation of germline stem cells (GSCs) to oocytes in Drosophila involves changes in …
differentiation of germline stem cells (GSCs) to oocytes in Drosophila involves changes in …
The role of insulators and transcription in 3D chromatin organization of flies
KT Chathoth, LA Mikheeva, G Crevel, JC Wolfe… - Genome …, 2022 - genome.cshlp.org
The DNA in many organisms, including humans, is shown to be organized in topologically
associating domains (TADs). In Drosophila, several architectural proteins are enriched at …
associating domains (TADs). In Drosophila, several architectural proteins are enriched at …
[HTML][HTML] Cis-regulatory modes of Ultrabithorax inactivation in butterfly forewings
Hox gene clusters encode transcription factors that drive regional specialization during
animal development: for example the Hox factor Ubx is expressed in the insect metathoracic …
animal development: for example the Hox factor Ubx is expressed in the insect metathoracic …
Mode and Tempo of 3D Genome Evolution in Drosophila
NS Torosin, TR Golla, MA Lawlor… - … biology and evolution, 2022 - academic.oup.com
Topologically associating domains (TADs) are thought to play an important role in
preventing gene misexpression by spatially constraining enhancer–promoter contacts. The …
preventing gene misexpression by spatially constraining enhancer–promoter contacts. The …
[HTML][HTML] Role of non-coding variants in Brugada syndrome
A Pérez-Agustín, M Pinsach-Abuin… - International Journal of …, 2020 - mdpi.com
Brugada syndrome (BrS) is an inherited electrical heart disease associated with a high risk
of sudden cardiac death (SCD). The genetic characterization of BrS has always been …
of sudden cardiac death (SCD). The genetic characterization of BrS has always been …
Transcription and splicing dynamics during early Drosophila development
Widespread cotranscriptional splicing has been demonstrated from yeast to human.
However, most studies to date addressing the kinetics of splicing relative to transcription …
However, most studies to date addressing the kinetics of splicing relative to transcription …