The plant noncoding transcriptome: a versatile environmental sensor

U Chorostecki, NG Bologna, F Ariel - The EMBO Journal, 2023 - embopress.org
Plant noncoding RNA transcripts have gained increasing attention in recent years due to
growing evidence that they can regulate developmental plasticity. In this review article, we …

Three-dimensional chromatin packing and positioning of plant genomes

ES Doğan, C Liu - Nature plants, 2018 - nature.com
Abstract Information and function of a genome are not only decorated with epigenetic marks
in the linear DNA sequence but also in their non-random spatial organization in the nucleus …

Shifting the limits in wheat research and breeding using a fully annotated reference genome

International Wheat Genome Sequencing Consortium … - Science, 2018 - science.org
INTRODUCTION Wheat (Triticum aestivum L.) is the most widely cultivated crop on Earth,
contributing about a fifth of the total calories consumed by humans. Consequently, wheat …

[HTML][HTML] The Rosa genome provides new insights into the domestication of modern roses

O Raymond, J Gouzy, J Just, H Badouin… - Nature …, 2018 - nature.com
Roses have high cultural and economic importance as ornamental plants and in the
perfume industry. We report the rose whole-genome sequencing and assembly and …

R-loop mediated trans action of the APOLO long noncoding RNA

F Ariel, L Lucero, A Christ, MF Mammarella, T Jegu… - Molecular Cell, 2020 - cell.com
In eukaryotes, three-dimensional genome organization is critical for transcriptional
regulation of gene expression. Long noncoding RNAs (lncRNAs) can modulate chromatin …

Whole-genome landscape of Medicago truncatula symbiotic genes

Y Pecrix, SE Staton, E Sallet, C Lelandais-Brière… - Nature Plants, 2018 - nature.com
Advances in deciphering the functional architecture of eukaryotic genomes have been
facilitated by recent breakthroughs in sequencing technologies, enabling a more …

Wheat chromatin architecture is organized in genome territories and transcription factories

L Concia, A Veluchamy, JS Ramirez-Prado… - Genome Biology, 2020 - Springer
Background Polyploidy is ubiquitous in eukaryotic plant and fungal lineages, and it leads to
the co-existence of several copies of similar or related genomes in one nucleus. In plants …

The lncRNA APOLO interacts with the transcription factor WRKY42 to trigger root hair cell expansion in response to cold

M Moison, JM Pacheco, L Lucero, C Fonouni-Farde… - Molecular Plant, 2021 - cell.com
Plant long noncoding RNAs (lncRNAs) have emerged as important regulators of chromatin
dynamics, impacting on transcriptional programs leading to different developmental outputs …

Distinct phases of Polycomb silencing to hold epigenetic memory of cold in Arabidopsis

H Yang, S Berry, TSG Olsson, M Hartley, M Howard… - Science, 2017 - science.org
Gene silencing by Polycomb complexes is central to eukaryotic development. Cold-induced
epigenetic repression of FLOWERING LOCUS C (FLC) in the plant Arabidopsis provides an …

Cold stress induces enhanced chromatin accessibility and bivalent histone modifications H3K4me3 and H3K27me3 of active genes in potato

Z Zeng, W Zhang, AP Marand, B Zhu, CR Buell, J Jiang - Genome biology, 2019 - Springer
Background Cold stress can greatly affect plant growth and development. Plants have
developed special systems to respond to and tolerate cold stress. While plant scientists have …