[HTML][HTML] Named entity recognition and relation detection for biomedical information extraction

N Perera, M Dehmer, F Emmert-Streib - Frontiers in cell and …, 2020 - frontiersin.org
The number of scientific publications in the literature is steadily growing, containing our
knowledge in the biomedical, health, and clinical sciences. Since there is currently no …

Molecular networks in Network Medicine: Development and applications

EK Silverman, HHHW Schmidt… - … Systems Biology and …, 2020 - Wiley Online Library
Network Medicine applies network science approaches to investigate disease
pathogenesis. Many different analytical methods have been used to infer relevant molecular …

A Survey on Cross‐Virtuality Analytics

B Fröhler, C Anthes, F Pointecker… - Computer Graphics …, 2022 - Wiley Online Library
Cross‐virtuality analytics (XVA) is a novel field of research within immersive analytics and
visual analytics. A broad range of heterogeneous devices across the reality–virtuality …

[HTML][HTML] BPG: Seamless, automated and interactive visualization of scientific data

C P'ng, J Green, LC Chong, D Waggott, SD Prokopec… - BMC …, 2019 - Springer
Background We introduce BPG, a framework for generating publication-quality, highly-
customizable plots in the R statistical environment. Results This open-source package …

Quantitative graph theory: a new branch of graph theory and network science

M Dehmer, F Emmert-Streib, Y Shi - Information Sciences, 2017 - Elsevier
In this paper, we describe some highlights of the new branch quantitative graph theory and
explain its significant different features compared to classical graph theory. The main goal of …

[HTML][HTML] Bioinformatics: from NGS data to biological complexity in variant detection and oncological clinical practice

S Dotolo, R Esposito Abate, C Roma, D Guido… - Biomedicines, 2022 - mdpi.com
The use of next-generation sequencing (NGS) techniques for variant detection has become
increasingly important in clinical research and in clinical practice in oncology. Many cancer …

[HTML][HTML] A novel interpretable deep transfer learning combining diverse learnable parameters for improved T2D prediction based on single-cell gene regulatory …

S Alghamdi, T Turki - Scientific Reports, 2024 - nature.com
Accurate deep learning (DL) models to predict type 2 diabetes (T2D) are concerned not only
with targeting the discrimination task but also with learning useful feature representation …

[HTML][HTML] Comprehensive molecular pathology analysis of small bowel adenocarcinoma reveals novel targets with potential for clinical utility

MA Alvi, DG McArt, P Kelly, MA Fuchs, M Alderdice… - Oncotarget, 2015 - ncbi.nlm.nih.gov
Small bowel accounts for only 0.5% of cancer cases in the US but incidence rates have
been rising at 2.4% per year over the past decade. One-third of these are adenocarcinomas …

[HTML][HTML] Transforming graph data visualisations from 2D displays into augmented reality 3D space: A quantitative study

D Schwajda, J Friedl, F Pointecker, HC Jetter… - Frontiers in Virtual …, 2023 - frontiersin.org
Modern video-based head-mounted displays allow users to operate along Milgram's entire
reality-virtuality continuum. This opens up the field for novel cross-reality applications that …

UniPath: a uniform approach for pathway and gene-set based analysis of heterogeneity in single-cell epigenome and transcriptome profiles

S Chawla, S Samydurai, SL Kong, Z Wu… - Nucleic acids …, 2021 - academic.oup.com
Recent advances in single-cell open-chromatin and transcriptome profiling have created a
challenge of exploring novel applications with a meaningful transformation of read-counts …