The functions and unique features of long intergenic non-coding RNA

JD Ransohoff, Y Wei, PA Khavari - Nature reviews Molecular cell …, 2018 - nature.com
Long intergenic non-coding RNA (lincRNA) genes have diverse features that distinguish
them from mRNA-encoding genes and exercise functions such as remodelling chromatin …

Long non-coding RNAs: new players in cell differentiation and development

A Fatica, I Bozzoni - Nature Reviews Genetics, 2014 - nature.com
Genomes of multicellular organisms are characterized by the pervasive expression of
different types of non-coding RNAs (ncRNAs). Long ncRNAs (lncRNAs) belong to a novel …

The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression

T Derrien, R Johnson, G Bussotti, A Tanzer… - Genome …, 2012 - genome.cshlp.org
The human genome contains many thousands of long noncoding RNAs (lncRNAs). While
several studies have demonstrated compelling biological and disease roles for individual …

CPC: assess the protein-coding potential of transcripts using sequence features and support vector machine

L Kong, Y Zhang, ZQ Ye, XQ Liu, SQ Zhao… - Nucleic acids …, 2007 - academic.oup.com
Recent transcriptome studies have revealed that a large number of transcripts in mammals
and other organisms do not encode proteins but function as noncoding RNAs (ncRNAs) …

[HTML][HTML] Long non-coding RNAs: Mechanism of action and functional utility

SA Bhat, SM Ahmad, PT Mumtaz, AA Malik… - Non-coding RNA …, 2016 - Elsevier
Recent RNA sequencing studies have revealed that most of the human genome is
transcribed, but very little of the total transcriptomes has the ability to encode proteins. Long …

[HTML][HTML] The many pathways of RNA degradation

J Houseley, D Tollervey - Cell, 2009 - cell.com
From the earliest comparisons of RNA production with steady-state levels, it has been clear
that cells transcribe more RNA than they accumulate, implying the existence of active RNA …

Large-scale prediction of long non-coding RNA functions in a coding–non-coding gene co-expression network

Q Liao, C Liu, X Yuan, S Kang, R Miao… - Nucleic acids …, 2011 - academic.oup.com
Although accumulating evidence has provided insight into the various functions of long-non-
coding RNAs (lncRNAs), the exact functions of the majority of such transcripts are still …

Genome-wide discovery and characterization of maize long non-coding RNAs

L Li, SR Eichten, R Shimizu, K Petsch, CT Yeh, W Wu… - Genome biology, 2014 - Springer
Abstract Background Long non-coding RNAs (lncRNAs) are transcripts that are 200 bp or
longer, do not encode proteins, and potentially play important roles in eukaryotic gene …

Functionality or transcriptional noise? Evidence for selection within long noncoding RNAs

J Ponjavic, CP Ponting, G Lunter - Genome research, 2007 - genome.cshlp.org
Long transcripts that do not encode protein have only rarely been the subject of
experimental scrutiny. Presumably, this is owing to the current lack of evidence of their …

A regression-based analysis of ribosome-profiling data reveals a conserved complexity to mammalian translation

AP Fields, EH Rodriguez, M Jovanovic… - Molecular cell, 2015 - cell.com
A fundamental goal of genomics is to identify the complete set of expressed proteins.
Automated annotation strategies rely on assumptions about protein-coding sequences …