T cell epitope prediction and its application to immunotherapy
T cells play a crucial role in controlling and driving the immune response with their ability to
discriminate peptides derived from healthy as well as pathogenic proteins. In this review, we …
discriminate peptides derived from healthy as well as pathogenic proteins. In this review, we …
Benchmarking AlphaFold for protein complex modeling reveals accuracy determinants
High‐resolution experimental structural determination of protein–protein interactions has led
to valuable mechanistic insights, yet due to the massive number of interactions and …
to valuable mechanistic insights, yet due to the massive number of interactions and …
TCRmodel2: high-resolution modeling of T cell receptor recognition using deep learning
R Yin, HV Ribeiro-Filho, V Lin… - Nucleic Acids …, 2023 - academic.oup.com
The cellular immune system, which is a critical component of human immunity, uses T cell
receptors (TCRs) to recognize antigenic proteins in the form of peptides presented by major …
receptors (TCRs) to recognize antigenic proteins in the form of peptides presented by major …
Methods for sequence and structural analysis of B and T cell receptor repertoires
S Teraguchi, DS Saputri… - Computational and …, 2020 - Elsevier
B cell receptors (BCRs) and T cell receptors (TCRs) make up an essential network of
defense molecules that, collectively, can distinguish self from non-self and facilitate …
defense molecules that, collectively, can distinguish self from non-self and facilitate …
H3K27M neoepitope vaccination in diffuse midline glioma induces B and T cell responses across diverse HLA loci of a recovered patient
T Boschert, K Kromer, T Lerner, K Lindner… - Science …, 2024 - science.org
H3K27M, a driver mutation with T and B cell neoepitope characteristics, defines an
aggressive subtype of diffuse glioma with poor survival. We functionally dissect the immune …
aggressive subtype of diffuse glioma with poor survival. We functionally dissect the immune …
Comparative analysis of the CDR loops of antigen receptors
The adaptive immune system uses two main types of antigen receptors: T-cell receptors
(TCRs) and antibodies. While both proteins share a globally similar β-sandwich architecture …
(TCRs) and antibodies. While both proteins share a globally similar β-sandwich architecture …
CrossDome: an interactive R package to predict cross-reactivity risk using immunopeptidomics databases
AF Fonseca, DA Antunes - Frontiers in Immunology, 2023 - frontiersin.org
T-cell-based immunotherapies hold tremendous potential in the fight against cancer, thanks
to their capacity to specifically targeting diseased cells. Nevertheless, this potential has been …
to their capacity to specifically targeting diseased cells. Nevertheless, this potential has been …
Predicting T cell receptor antigen specificity from structural features derived from homology models of receptor-peptide-major histocompatibility complexes
The physical interaction between the T cell receptor (TCR) and its cognate antigen causes T
cells to activate and participate in the immune response. Understanding this physical …
cells to activate and participate in the immune response. Understanding this physical …
[HTML][HTML] Strengths and limitations of web servers for the modeling of TCRpMHC complexes
Cellular immunity relies on the ability of a T-cell receptor (TCR) to recognize a peptide (p)
presented by a class I major histocompatibility complex (MHC) receptor on the surface of a …
presented by a class I major histocompatibility complex (MHC) receptor on the surface of a …
Cracking the code of adaptive immunity: The role of computational tools
K Vegesana, PG Thomas - Cell Systems, 2024 - cell.com
In recent years, the advances in high-throughput and deep sequencing have generated a
diverse amount of adaptive immune repertoire data. This surge in data has seen a …
diverse amount of adaptive immune repertoire data. This surge in data has seen a …