The molecular interactions that stabilize RNA tertiary structure: RNA motifs, patterns, and networks
SE Butcher, AM Pyle - Accounts of chemical research, 2011 - ACS Publications
RNA molecules adopt specific three-dimensional structures critical to their function. Many
essential metabolic processes, including protein synthesis and RNA splicing, are carried out …
essential metabolic processes, including protein synthesis and RNA splicing, are carried out …
The building blocks and motifs of RNA architecture
NB Leontis, A Lescoute, E Westhof - Current opinion in structural biology, 2006 - Elsevier
RNA motifs can be defined broadly as recurrent structural elements containing multiple
intramolecular RNA–RNA interactions, as observed in atomic-resolution RNA structures …
intramolecular RNA–RNA interactions, as observed in atomic-resolution RNA structures …
[HTML][HTML] Embracing proteins: structural themes in aptamer–protein complexes
AD Gelinas, DR Davies, N Janjic - Current opinion in structural biology, 2016 - Elsevier
Highlights•Traditional aptamers fold into structures with established nucleic acid
motifs.•Modified nucleotides expand the repertoire of known nucleic acid structural …
motifs.•Modified nucleotides expand the repertoire of known nucleic acid structural …
Review of machine learning methods for RNA secondary structure prediction
Q Zhao, Z Zhao, X Fan, Z Yuan, Q Mao… - PLoS computational …, 2021 - journals.plos.org
Secondary structure plays an important role in determining the function of noncoding RNAs.
Hence, identifying RNA secondary structures is of great value to research. Computational …
Hence, identifying RNA secondary structures is of great value to research. Computational …
RNA STRAND: the RNA secondary structure and statistical analysis database
Background The ability to access, search and analyse secondary structures of a large set of
known RNA molecules is very important for deriving improved RNA energy models, for …
known RNA molecules is very important for deriving improved RNA energy models, for …
Analysis of RNA motifs
NB Leontis, E Westhof - Current opinion in structural biology, 2003 - Elsevier
RNA motifs are directed and ordered stacked arrays of non-Watson–Crick base pairs
forming distinctive foldings of the phosphodiester backbones of the interacting RNA strands …
forming distinctive foldings of the phosphodiester backbones of the interacting RNA strands …
RNA structural motifs: building blocks of a modular biomolecule
DK Hendrix, SE Brenner, SR Holbrook - Quarterly reviews of …, 2005 - cambridge.org
1. Introduction 2222. What is an RNA motif? 2222.1 Sequence vs. structural motifs 2222.2
RNA structural motifs 2232.3 RNA structural elements vs. motifs 2232.4 Specific recognition …
RNA structural motifs 2232.3 RNA structural elements vs. motifs 2232.4 Specific recognition …
A systematic analysis of the silencing effects of an active siRNA at all single-nucleotide mismatched target sites
Q Du, H Thonberg, J Wang, C Wahlestedt… - Nucleic acids …, 2005 - academic.oup.com
The specificity of small interfering RNA (siRNA)-mediated gene silencing is a critical
consideration for the application of RNA interference (RNAi). While the discovery of potential …
consideration for the application of RNA interference (RNAi). While the discovery of potential …
[HTML][HTML] RNA as a stable polymer to build controllable and defined nanostructures for material and biomedical applications
The value of polymers is manifested in their vital use as building blocks in material and life
sciences. Ribonucleic acid (RNA) is a polynucleic acid, but its polymeric nature in materials …
sciences. Ribonucleic acid (RNA) is a polynucleic acid, but its polymeric nature in materials …
Mechanism for expanding the decoding capacity of transfer RNAs by modification of uridines
A Weixlbaumer, FV Murphy IV, A Dziergowska… - Nature structural & …, 2007 - nature.com
One of the most prevalent base modifications involved in decoding is uridine 5-oxyacetic
acid at the wobble position of tRNA. It has been known for several decades that this …
acid at the wobble position of tRNA. It has been known for several decades that this …