Latest advances in molecular topology applications for drug discovery

R Zanni, M Galvez-Llompart… - Expert opinion on …, 2015 - Taylor & Francis
Introduction: Molecular topology (MT) has emerged in recent years as a powerful approach
for the in silico generation of new drugs. In the last decade, its application has become more …

A new perspective on predicting the reaction rate constants of hydrated electrons for organic contaminants: Exploring molecular structure characterization methods …

T Zhu, S Li, L Li, C Tao - Science of the Total Environment, 2023 - Elsevier
Hydrated electrons (e aq−) exhibit rapid degradation of diverse persistent organic
contaminants (OCs) and hold great promise as a formidable reducing agent in water …

QSPR and flow cytometry analysis (QSPR-FCA): review and new findings on parallel study of multiple interactions of chemical compounds with immune cellular and …

E Tenorio-Borroto, FR Ramirez… - Current drug …, 2014 - benthamdirect.com
The immune system helps to halt the infections caused by pathogenic microbial and
parasitic agents. The ChEMBL database lists very large datasets of cytotoxicity of organic …

Matrix trace operators: from spectral moments of molecular graphs and complex networks to perturbations in synthetic reactions, micelle nanoparticles, and drug …

H Gonzalez-Diaz, S Arrasate… - Current Drug …, 2014 - ingentaconnect.com
The study of quantitative structure-property relationships (QSPR) is important to study
complex networks of chemical reactions in drug synthesis or metabolism or drug-target …

Perturbation theory machine learning models: theory, regulatory issues, and applications to organic synthesis, medicinal chemistry, protein research, and technology

S Arrasate, A Duardo-Sanchez - Current Topics in Medicinal …, 2018 - ingentaconnect.com
Machine Learning (ML) models are very useful to predict physicochemical properties of
small organic molecules, proteins, proteomes, and complex systems. These methods may …

MI-NODES multiscale models of metabolic reactions, brain connectome, ecological, epidemic, world trade, and legal-social networks

A Duardo-Sanchez, H Gonzalez-Diaz… - Current …, 2015 - ingentaconnect.com
Complex systems and networks appear in almost all areas of reality. We find then from
proteins residue networks to Protein Interaction Networks (PINs). Chemical reactions form …

Experimental-theoretic approach to drug-lymphocyte interactome networks with flow cytometry and spectral moments perturbation theory

P Abeijón, X García-Mera, O Caamaño… - Current …, 2016 - benthamdirect.com
We can combine experimental techniques like Flow Cytometry Analysis (FCA) with
Chemoinformatics methods to predict the complex networks of interactions between organic …

MIANN models of networks of biochemical reactions, ecosystems, and US Supreme Court with Balaban-Markov indices

A Duardo-Sánchez, H González-Díaz… - Current …, 2015 - ingentaconnect.com
We can use Artificial Neural Networks (ANNs) and graph Topological Indices (TIs) to seek
structure-property relationship. Balabans' J index is one of the classic TIs for chemo …

Optimizing Wiener and Randić Indices of Graphs

AC Mahasinghe, K Erandi… - Advances in Operations …, 2020 - Wiley Online Library
Wiener and Randić indices have long been studied in chemical graph theory as connection
strength measures of graphs. Later, these indices were used in different fields such as …