Supervised machine learning for population genetics: a new paradigm
DR Schrider, AD Kern - Trends in Genetics, 2018 - cell.com
As population genomic datasets grow in size, researchers are faced with the daunting task
of making sense of a flood of information. To keep pace with this explosion of data …
of making sense of a flood of information. To keep pace with this explosion of data …
Approximate bayesian computation
MA Beaumont - Annual review of statistics and its application, 2019 - annualreviews.org
Many of the statistical models that could provide an accurate, interesting, and testable
explanation for the structure of a data set turn out to have intractable likelihood functions …
explanation for the structure of a data set turn out to have intractable likelihood functions …
Efficient ancestry and mutation simulation with msprime 1.0
Stochastic simulation is a key tool in population genetics, since the models involved are
often analytically intractable and simulation is usually the only way of obtaining ground-truth …
often analytically intractable and simulation is usually the only way of obtaining ground-truth …
[图书][B] Handbook of approximate Bayesian computation
As the world becomes increasingly complex, so do the statistical models required to analyse
the challenging problems ahead. For the very first time in a single volume, the Handbook of …
the challenging problems ahead. For the very first time in a single volume, the Handbook of …
Benchmarking simulation-based inference
Recent advances in probabilistic modelling have led to a large number of simulation-based
inference algorithms which do not require numerical evaluation of likelihoods. However, a …
inference algorithms which do not require numerical evaluation of likelihoods. However, a …
Automatic posterior transformation for likelihood-free inference
D Greenberg, M Nonnenmacher… - … on Machine Learning, 2019 - proceedings.mlr.press
How can one perform Bayesian inference on stochastic simulators with intractable
likelihoods? A recent approach is to learn the posterior from adaptively proposed …
likelihoods? A recent approach is to learn the posterior from adaptively proposed …
Sequential neural likelihood: Fast likelihood-free inference with autoregressive flows
G Papamakarios, D Sterratt… - The 22nd international …, 2019 - proceedings.mlr.press
Abstract We present Sequential Neural Likelihood (SNL), a new method for Bayesian
inference in simulator models, where the likelihood is intractable but simulating data from …
inference in simulator models, where the likelihood is intractable but simulating data from …
Training deep neural density estimators to identify mechanistic models of neural dynamics
Mechanistic modeling in neuroscience aims to explain observed phenomena in terms of
underlying causes. However, determining which model parameters agree with complex and …
underlying causes. However, determining which model parameters agree with complex and …
Approximate bayesian computation
M Sunnåker, AG Busetto, E Numminen… - PLoS computational …, 2013 - journals.plos.org
Approximate Bayesian computation (ABC) constitutes a class of computational methods
rooted in Bayesian statistics. In all model-based statistical inference, the likelihood function …
rooted in Bayesian statistics. In all model-based statistical inference, the likelihood function …
Flexible statistical inference for mechanistic models of neural dynamics
JM Lueckmann, PJ Goncalves… - Advances in neural …, 2017 - proceedings.neurips.cc
Mechanistic models of single-neuron dynamics have been extensively studied in
computational neuroscience. However, identifying which models can quantitatively …
computational neuroscience. However, identifying which models can quantitatively …