Brian 2, an intuitive and efficient neural simulator
Brian 2 allows scientists to simply and efficiently simulate spiking neural network models.
These models can feature novel dynamical equations, their interactions with the …
These models can feature novel dynamical equations, their interactions with the …
Connectivity concepts in neuronal network modeling
J Senk, B Kriener, M Djurfeldt, N Voges… - PLoS computational …, 2022 - journals.plos.org
Sustainable research on computational models of neuronal networks requires published
models to be understandable, reproducible, and extendable. Missing details or ambiguities …
models to be understandable, reproducible, and extendable. Missing details or ambiguities …
Simulating spiking neural networks on GPU
R Brette, DFM Goodman - Network: Computation in Neural …, 2012 - Taylor & Francis
Modern graphics cards contain hundreds of cores that can be programmed for intensive
calculations. They are beginning to be used for spiking neural network simulations. The goal …
calculations. They are beginning to be used for spiking neural network simulations. The goal …
GeNN: a code generation framework for accelerated brain simulations
Large-scale numerical simulations of detailed brain circuit models are important for
identifying hypotheses on brain functions and testing their consistency and plausibility. An …
identifying hypotheses on brain functions and testing their consistency and plausibility. An …
BluePyOpt: leveraging open source software and cloud infrastructure to optimise model parameters in neuroscience
W Van Geit, M Gevaert, G Chindemi… - Frontiers in …, 2016 - frontiersin.org
At many scales in neuroscience, appropriate mathematical models take the form of complex
dynamical systems. Parameterizing such models to conform to the multitude of available …
dynamical systems. Parameterizing such models to conform to the multitude of available …
Equation-oriented specification of neural models for simulations
Simulating biological neuronal networks is a core method of research in computational
neuroscience. A full specification of such a network model includes a description of the …
neuroscience. A full specification of such a network model includes a description of the …
LEMS: a language for expressing complex biological models in concise and hierarchical form and its use in underpinning NeuroML 2
Computational models are increasingly important for studying complex neurophysiological
systems. As scientific tools, it is essential that such models can be reproduced and critically …
systems. As scientific tools, it is essential that such models can be reproduced and critically …
Supercomputers ready for use as discovery machines for neuroscience
NEST is a widely used tool to simulate biological spiking neural networks. Here we explain
the improvements, guided by a mathematical model of memory consumption, that enable us …
the improvements, guided by a mathematical model of memory consumption, that enable us …
Reproducibility in computational neuroscience models and simulations
RA McDougal, AS Bulanova… - IEEE Transactions on …, 2016 - ieeexplore.ieee.org
Objective: Like all scientific research, computational neuroscience research must be
reproducible. Big data science, including simulation research, cannot depend exclusively on …
reproducible. Big data science, including simulation research, cannot depend exclusively on …
Code generation in computational neuroscience: a review of tools and techniques
Advances in experimental techniques and computational power allowing researchers to
gather anatomical and electrophysiological data at unprecedented levels of detail have …
gather anatomical and electrophysiological data at unprecedented levels of detail have …