Genomic surveillance for antimicrobial resistance—a One Health perspective

SP Djordjevic, VM Jarocki, T Seemann… - Nature Reviews …, 2024 - nature.com
Antimicrobial resistance (AMR)—the ability of microorganisms to adapt and survive under
diverse chemical selection pressures—is influenced by complex interactions between …

Metal‐based nanomaterials in biomedical applications: antimicrobial activity and cytotoxicity aspects

P Makvandi, C Wang, EN Zare… - Advanced Functional …, 2020 - Wiley Online Library
Microbial colonization on material surfaces is ubiquitous. Biofilms derived from surface‐
colonized microbes pose serious problems to the society from both an economical …

Genomic analysis of sewage from 101 countries reveals global landscape of antimicrobial resistance

P Munk, C Brinch, FD Møller, TN Petersen… - Nature …, 2022 - nature.com
Antimicrobial resistance (AMR) is a major threat to global health. Understanding the
emergence, evolution, and transmission of individual antibiotic resistance genes (ARGs) is …

ResFinder–an open online resource for identification of antimicrobial resistance genes in next-generation sequencing data and prediction of phenotypes from …

AF Florensa, RS Kaas, PTLC Clausen… - Microbial …, 2022 - microbiologyresearch.org
Antimicrobial resistance (AMR) is one of the most important health threats globally. The
ability to accurately identify resistant bacterial isolates and the individual antimicrobial …

AMRFinderPlus and the Reference Gene Catalog facilitate examination of the genomic links among antimicrobial resistance, stress response, and virulence

M Feldgarden, V Brover, N Gonzalez-Escalona… - Scientific reports, 2021 - nature.com
Antimicrobial resistance (AMR) is a significant public health threat. With the rise of affordable
whole genome sequencing, in silico approaches to assessing AMR gene content can be …

Minimizing treatment-induced emergence of antibiotic resistance in bacterial infections

M Stracy, O Snitser, I Yelin, Y Amer, M Parizade, R Katz… - Science, 2022 - science.org
Treatment of bacterial infections currently focuses on choosing an antibiotic that matches a
pathogen's susceptibility, with less attention paid to the risk that even susceptibility-matched …

ResFinder 4.0 for predictions of phenotypes from genotypes

V Bortolaia, RS Kaas, E Ruppe… - Journal of …, 2020 - academic.oup.com
Objectives WGS-based antimicrobial susceptibility testing (AST) is as reliable as phenotypic
AST for several antimicrobial/bacterial species combinations. However, routine use of WGS …

Detection of mobile genetic elements associated with antibiotic resistance in Salmonella enterica using a newly developed web tool: MobileElementFinder

MHK Johansson, V Bortolaia… - Journal of …, 2021 - academic.oup.com
Objectives Antimicrobial resistance (AMR) in clinically relevant bacteria is a growing threat
to public health globally. In these bacteria, antimicrobial resistance genes are often …

CARD 2020: antibiotic resistome surveillance with the comprehensive antibiotic resistance database

BP Alcock, AR Raphenya, TTY Lau… - Nucleic acids …, 2020 - academic.oup.com
Abstract The Comprehensive Antibiotic Resistance Database (CARD; https://card. mcmaster.
ca) is a curated resource providing reference DNA and protein sequences, detection models …

Stunted microbiota and opportunistic pathogen colonization in caesarean-section birth

Y Shao, SC Forster, E Tsaliki, K Vervier, A Strang… - Nature, 2019 - nature.com
Immediately after birth, newborn babies experience rapid colonization by microorganisms
from their mothers and the surrounding environment. Diseases in childhood and later in life …