Semi-parametric estimates of population accuracy and bias of predictions of breeding values and future phenotypes using the LR method

A Legarra, A Reverter - Genetics Selection Evolution, 2018 - Springer
Background Cross-validation tools are used increasingly to validate and compare genetic
evaluation methods but analytical properties of cross-validation methods are rarely …

Complex-trait prediction in the era of big data

G de Los Campos, AI Vazquez, S Hsu, L Lello - Trends in Genetics, 2018 - cell.com
Accurate prediction of complex traits requires using a large number of DNA variants.
Advances in statistical and machine learning methodology enable the identification of …

Multitrait Bayesian shrinkage and variable selection models with the BGLR-R package

P Pérez-Rodríguez, G de Los Campos - Genetics, 2022 - academic.oup.com
The BGLR-R package implements various types of single-trait shrinkage/variable selection
Bayesian regressions. The package was first released in 2014, since then it has become a …

Genomic Prediction of Agronomic Traits in Common Bean (Phaseolus vulgaris L.) Under Environmental Stress

B Keller, D Ariza-Suarez, J De la Hoz… - Frontiers in Plant …, 2020 - frontiersin.org
In plant and animal breeding, genomic prediction models are established to select new lines
based on genomic data, without the need for laborious phenotyping. Prediction models can …

Simultaneous selection for grain yield and protein content in genomics-assisted wheat breeding

S Michel, F Löschenberger, C Ametz, B Pachler… - Theoretical and Applied …, 2019 - Springer
Key message Large genetic improvement can be achieved by simultaneous genomic
selection for grain yield and protein content when combining different breeding strategies in …

Harnessing underutilized gene bank diversity and genomic prediction of cross usefulness to enhance resistance to Phytophthora cactorum in strawberry

NP Jiménez, MJ Feldmann, RA Famula… - The plant …, 2023 - Wiley Online Library
The development of strawberry (Fragaria× ananassa Duchesne ex Rozier) cultivars resistant
to Phytophthora crown rot (PhCR), a devastating disease caused by the soil‐borne …

Genomic Selection for Late Blight and Common Scab Resistance in Tetraploid Potato (Solanum tuberosum)

F Enciso-Rodriguez, D Douches… - G3: Genes …, 2018 - academic.oup.com
Potato (Solanum tuberosum) is a staple food crop and is considered one of the main
sources of carbohydrates worldwide. Late blight (Phytophthora infestans) and common scab …

[HTML][HTML] Use of genomic selection and breeding simulation in cross prediction for improvement of yield and quality in wheat (Triticum aestivum L.)

J Yao, D Zhao, X Chen, Y Zhang, J Wang - The Crop Journal, 2018 - Elsevier
In wheat breeding, it is a difficult task to select the most suitable parents for making crosses
aimed at the improvement of both grain yield and grain quality. By quantitative genetics …

Genetic gain increases by applying the usefulness criterion with improved variance prediction in selection of crosses

C Lehermeier, S Teyssèdre, CC Schön - Genetics, 2017 - academic.oup.com
A crucial step in plant breeding is the selection and combination of parents to form new
crosses. Genome-based prediction guides the selection of high-performing parental lines in …

Improving short-and long-term genetic gain by accounting for within-family variance in optimal cross-selection

A Allier, C Lehermeier, A Charcosset, L Moreau… - Frontiers in …, 2019 - frontiersin.org
The implementation of genomic selection in recurrent breeding programs raises the concern
that a higher inbreeding rate could compromise the long-term genetic gain. An optimized …