Semi-parametric estimates of population accuracy and bias of predictions of breeding values and future phenotypes using the LR method
A Legarra, A Reverter - Genetics Selection Evolution, 2018 - Springer
Background Cross-validation tools are used increasingly to validate and compare genetic
evaluation methods but analytical properties of cross-validation methods are rarely …
evaluation methods but analytical properties of cross-validation methods are rarely …
Complex-trait prediction in the era of big data
Accurate prediction of complex traits requires using a large number of DNA variants.
Advances in statistical and machine learning methodology enable the identification of …
Advances in statistical and machine learning methodology enable the identification of …
Multitrait Bayesian shrinkage and variable selection models with the BGLR-R package
P Pérez-Rodríguez, G de Los Campos - Genetics, 2022 - academic.oup.com
The BGLR-R package implements various types of single-trait shrinkage/variable selection
Bayesian regressions. The package was first released in 2014, since then it has become a …
Bayesian regressions. The package was first released in 2014, since then it has become a …
Genomic Prediction of Agronomic Traits in Common Bean (Phaseolus vulgaris L.) Under Environmental Stress
B Keller, D Ariza-Suarez, J De la Hoz… - Frontiers in Plant …, 2020 - frontiersin.org
In plant and animal breeding, genomic prediction models are established to select new lines
based on genomic data, without the need for laborious phenotyping. Prediction models can …
based on genomic data, without the need for laborious phenotyping. Prediction models can …
Simultaneous selection for grain yield and protein content in genomics-assisted wheat breeding
S Michel, F Löschenberger, C Ametz, B Pachler… - Theoretical and Applied …, 2019 - Springer
Key message Large genetic improvement can be achieved by simultaneous genomic
selection for grain yield and protein content when combining different breeding strategies in …
selection for grain yield and protein content when combining different breeding strategies in …
Harnessing underutilized gene bank diversity and genomic prediction of cross usefulness to enhance resistance to Phytophthora cactorum in strawberry
The development of strawberry (Fragaria× ananassa Duchesne ex Rozier) cultivars resistant
to Phytophthora crown rot (PhCR), a devastating disease caused by the soil‐borne …
to Phytophthora crown rot (PhCR), a devastating disease caused by the soil‐borne …
Genomic Selection for Late Blight and Common Scab Resistance in Tetraploid Potato (Solanum tuberosum)
F Enciso-Rodriguez, D Douches… - G3: Genes …, 2018 - academic.oup.com
Potato (Solanum tuberosum) is a staple food crop and is considered one of the main
sources of carbohydrates worldwide. Late blight (Phytophthora infestans) and common scab …
sources of carbohydrates worldwide. Late blight (Phytophthora infestans) and common scab …
[HTML][HTML] Use of genomic selection and breeding simulation in cross prediction for improvement of yield and quality in wheat (Triticum aestivum L.)
J Yao, D Zhao, X Chen, Y Zhang, J Wang - The Crop Journal, 2018 - Elsevier
In wheat breeding, it is a difficult task to select the most suitable parents for making crosses
aimed at the improvement of both grain yield and grain quality. By quantitative genetics …
aimed at the improvement of both grain yield and grain quality. By quantitative genetics …
Genetic gain increases by applying the usefulness criterion with improved variance prediction in selection of crosses
A crucial step in plant breeding is the selection and combination of parents to form new
crosses. Genome-based prediction guides the selection of high-performing parental lines in …
crosses. Genome-based prediction guides the selection of high-performing parental lines in …
Improving short-and long-term genetic gain by accounting for within-family variance in optimal cross-selection
A Allier, C Lehermeier, A Charcosset, L Moreau… - Frontiers in …, 2019 - frontiersin.org
The implementation of genomic selection in recurrent breeding programs raises the concern
that a higher inbreeding rate could compromise the long-term genetic gain. An optimized …
that a higher inbreeding rate could compromise the long-term genetic gain. An optimized …