Best practices in metabarcoding of fungi: from experimental design to results
The development of high‐throughput sequencing (HTS) technologies has greatly improved
our capacity to identify fungi and unveil their ecological roles across a variety of ecosystems …
our capacity to identify fungi and unveil their ecological roles across a variety of ecosystems …
Mycobiome diversity: high-throughput sequencing and identification of fungi
Fungi are major ecological players in both terrestrial and aquatic environments by cycling
organic matter and channelling nutrients across trophic levels. High-throughput sequencing …
organic matter and channelling nutrients across trophic levels. High-throughput sequencing …
[HTML][HTML] Unambiguous identification of fungi: where do we stand and how accurate and precise is fungal DNA barcoding?
True fungi (Fungi) and fungus-like organisms (eg Mycetozoa, Oomycota) constitute the
second largest group of organisms based on global richness estimates, with around 3 …
second largest group of organisms based on global richness estimates, with around 3 …
[HTML][HTML] Structure and function of the soil microbiome underlying N2O emissions from global wetlands
Wetland soils are the greatest source of nitrous oxide (N2O), a critical greenhouse gas and
ozone depleter released by microbes. Yet, microbial players and processes underlying the …
ozone depleter released by microbes. Yet, microbial players and processes underlying the …
Tracking, targeting, and conserving soil biodiversity
Nature conservation literature and policy instruments mainly focus on the impacts of human
development and the benefits of nature conservation for oceans and aboveground terrestrial …
development and the benefits of nature conservation for oceans and aboveground terrestrial …
[图书][B] Environmental DNA: For biodiversity research and monitoring
Environmental DNA (eDNA) refers to DNA that can be extracted from environmental
samples (such as soil, water, feces, or air) without the prior isolation of any target organism …
samples (such as soil, water, feces, or air) without the prior isolation of any target organism …
[HTML][HTML] Regional-scale in-depth analysis of soil fungal diversity reveals strong pH and plant species effects in Northern Europe
Soil microbiome has a pivotal role in ecosystem functioning, yet little is known about its build-
up from local to regional scales. In a multi-year regional-scale survey involving 1251 plots …
up from local to regional scales. In a multi-year regional-scale survey involving 1251 plots …
PacBio metabarcoding of Fungi and other eukaryotes: errors, biases and perspectives
L Tedersoo, A Tooming‐Klunderud… - New Phytologist, 2018 - Wiley Online Library
Second‐generation, high‐throughput sequencing methods have greatly improved our
understanding of the ecology of soil microorganisms, yet the short barcodes (< 500 bp) …
understanding of the ecology of soil microorganisms, yet the short barcodes (< 500 bp) …
SEED 2: a user-friendly platform for amplicon high-throughput sequencing data analyses
Motivation Modern molecular methods have increased our ability to describe microbial
communities. Along with the advances brought by new sequencing technologies, we now …
communities. Along with the advances brought by new sequencing technologies, we now …
Plant nutrient‐acquisition strategies drive topsoil microbiome structure and function
Plant nutrient‐acquisition strategies drive soil processes and vegetation performance, but
their effect on the soil microbiome remains poorly understood. This knowledge is important …
their effect on the soil microbiome remains poorly understood. This knowledge is important …