Yeast mitochondria: an overview of mitochondrial biology and the potential of mitochondrial systems biology

C Malina, C Larsson, J Nielsen - FEMS yeast research, 2018 - academic.oup.com
Mitochondria are dynamic organelles of endosymbiotic origin that are essential components
of eukaryal cells. They contain their own genetic machinery, have multicopy genomes and …

Alzheimer's disease beyond amyloid: Can the repetitive failures of amyloid-targeted therapeutics inform future approaches to dementia drug discovery?

K Mullane, M Williams - Biochemical pharmacology, 2020 - Elsevier
Alzheimer's Disease (AD) therapeutics based on the amyloid hypothesis have repeatedly
failed in clinical trials. Together with numerous reports that amyloid is present in brains from …

MetaNetX/MNXref: unified namespace for metabolites and biochemical reactions in the context of metabolic models

S Moretti, VDT Tran, F Mehl, M Ibberson… - Nucleic acids …, 2021 - academic.oup.com
MetaNetX/MNXref is a reconciliation of metabolites and biochemical reactions providing
cross-links between major public biochemistry and Genome-Scale Metabolic Network …

13C Metabolic Flux Analysis in Chondrocytes Reveals a Novel Switch in Metabolic Phenotype

R Tarantino, HM Jensen, SD Waldman - Tissue Engineering Part A, 2024 - liebertpub.com
Chondrocytes are typically known for their anaerobic metabolism both in vivo and under
culture conditions in vitro. However, chondrocytes have been shown to display greater …

Mitochondrial oxodicarboxylate carrier deficiency is associated with mitochondrial DNA depletion and spinal muscular atrophy–like disease

V Boczonadi, MS King, AC Smith, M Olahova… - Genetics in …, 2018 - nature.com
Purpose To understand the role of the mitochondrial oxodicarboxylate carrier (SLC25A21) in
the development of spinal muscular atrophy-like disease. Methods We identified a novel …

IL-17A Orchestrates Reactive Oxygen Species/HIF1a− Mediated Metabolic Reprogramming in Psoriasis

B Dhamija, S Marathe, V Sawant, M Basu… - JOURNAL OF …, 2024 - journals.aai.org
Immune cell− derived IL-17A is one of the key pathogenic cytokines in psoriasis, an
immunometabolic disorder. Although IL-17A is an established regulator of cutaneous …

The mitoXplorer 2.0 update: integrating and interpreting mitochondrial expression dynamics within a cellular context

F Marchiano, M Haering… - Nucleic Acids …, 2022 - academic.oup.com
Mitochondria are subcellular organelles present in almost all eukaryotic cells, which play a
central role in cellular metabolism. Different tissues, health and age conditions are …

The fate of glutamine in human metabolism. The interplay with glucose in proliferating cells

JP Mazat, S Ransac - Metabolites, 2019 - mdpi.com
Genome-scale models of metabolism (GEM) are used to study how metabolism varies in
different physiological conditions. However, the great number of reactions involved in GEM …

Integrative omics approaches provide biological and clinical insights: examples from mitochondrial diseases

S Khan, G Ince-Dunn, A Suomalainen… - The Journal of clinical …, 2020 - Am Soc Clin Investig
High-throughput technologies for genomics, transcriptomics, proteomics, and metabolomics,
and integrative analysis of these data, enable new, systems-level insights into disease …

Metabolic reprogramming in Rheumatoid Arthritis Synovial Fibroblasts: A hybrid modeling approach

S Aghakhani, S Soliman, A Niarakis - PLOS Computational …, 2022 - journals.plos.org
Rheumatoid Arthritis (RA) is an autoimmune disease characterized by a highly invasive
pannus formation consisting mainly of Synovial Fibroblasts (RASFs). This pannus leads to …