Coming of age: ten years of next-generation sequencing technologies

S Goodwin, JD McPherson, WR McCombie - Nature reviews genetics, 2016 - nature.com
Since the completion of the human genome project in 2003, extraordinary progress has
been made in genome sequencing technologies, which has led to a decreased cost per …

Genome structural variation discovery and genotyping

C Alkan, BP Coe, EE Eichler - Nature reviews genetics, 2011 - nature.com
Comparisons of human genomes show that more base pairs are altered as a result of
structural variation—including copy number variation—than as a result of point mutations …

The environmental microbiology minimum information (EMMI) guidelines: qPCR and dPCR quality and reporting for environmental microbiology

MA Borchardt, AB Boehm, M Salit… - Environmental …, 2021 - ACS Publications
Real-time quantitative polymerase chain reaction (qPCR) and digital PCR (dPCR) methods
have revolutionized environmental microbiology, yielding quantitative organism-specific …

Absolute quantification by droplet digital PCR versus analog real-time PCR

CM Hindson, JR Chevillet, HA Briggs, EN Gallichotte… - Nature …, 2013 - nature.com
Nanoliter-sized droplet technology paired with digital PCR (ddPCR) holds promise for highly
precise, absolute nucleic acid quantification. Our comparison of microRNA quantification by …

Highly accurate and sensitive diagnostic detection of SARS-CoV-2 by digital PCR

L Dong, J Zhou, C Niu, Q Wang, Y Pan, S Sheng… - Talanta, 2021 - Elsevier
The outbreak of COVID-19 caused by a novel Coronavirus (termed SARS-CoV-2) has
spread to over 210 countries around the world. Currently, reverse transcription quantitative …

High-throughput droplet digital PCR system for absolute quantitation of DNA copy number

BJ Hindson, KD Ness, DA Masquelier… - Analytical …, 2011 - ACS Publications
Digital PCR enables the absolute quantitation of nucleic acids in a sample. The lack of
scalable and practical technologies for digital PCR implementation has hampered the …

The Digital MIQE Guidelines: Minimum Information for Publication of Quantitative Digital PCR Experiments

JF Huggett, CA Foy, V Benes, K Emslie… - Clinical …, 2013 - academic.oup.com
There is growing interest in digital PCR (dPCR) because technological progress makes it a
practical and increasingly affordable technology. dPCR allows the precise quantification of …

Evaluation of a droplet digital polymerase chain reaction format for DNA copy number quantification

LB Pinheiro, VA Coleman, CM Hindson… - Analytical …, 2012 - ACS Publications
Droplet digital polymerase chain reaction (ddPCR) is a new technology that was recently
commercialized to enable the precise quantification of target nucleic acids in a sample …

Digital assays part I: partitioning statistics and digital PCR

AS Basu - SLAS TECHNOLOGY: Translating Life Sciences …, 2017 - journals.sagepub.com
A digital assay is one in which the sample is partitioned into many small containers such that
each partition contains a discrete number of biological entities (0, 1, 2, 3,…). A powerful …

Rapid pathogen-specific phenotypic antibiotic susceptibility testing using digital LAMP quantification in clinical samples

NG Schoepp, TS Schlappi, MS Curtis… - Science translational …, 2017 - science.org
Rapid antimicrobial susceptibility testing (AST) is urgently needed for informing treatment
decisions and preventing the spread of antimicrobial resistance resulting from the misuse …