Ecological modelling approaches for predicting emergent properties in microbial communities
NI van den Berg, D Machado, S Santos… - Nature ecology & …, 2022 - nature.com
Recent studies have brought forward the critical role of emergent properties in shaping
microbial communities and the ecosystems of which they are a part. Emergent properties …
microbial communities and the ecosystems of which they are a part. Emergent properties …
Hierarchical and simultaneous utilization of carbon substrates: mechanistic insights, physiological roles, and ecological consequences
Highlights•Utilization patterns on mixed carbon substrates depend on growth rates on
individual substrates and their entering points into metabolism.•Flux-based regulation …
individual substrates and their entering points into metabolism.•Flux-based regulation …
Generalized lotka-volterra systems with time correlated stochastic interactions
In this Letter, we explore the dynamics of species abundances within ecological
communities using the generalized Lotka-Volterra (GLV) model. At variance with previous …
communities using the generalized Lotka-Volterra (GLV) model. At variance with previous …
Discovery of an antitumor compound from xenorhabdus stockiae HN_xs01
X Huang, Q Tang, S Liu, C Li, Y Li, Y Sun… - World Journal of …, 2024 - Springer
Xenorhabdus, known for its symbiotic relationship with Entomopathogenic nematodes
(EPNs), belongs to the Enterobacteriaceae family. This dual-host symbiotic nematode …
(EPNs), belongs to the Enterobacteriaceae family. This dual-host symbiotic nematode …
Emergent ecological patterns and modelling of gut microbiomes in health and in disease
J Pasqualini, S Facchin, A Rinaldo… - PLOS Computational …, 2024 - journals.plos.org
Recent advancements in next-generation sequencing have revolutionized our
understanding of the human microbiome. Despite this progress, challenges persist in …
understanding of the human microbiome. Despite this progress, challenges persist in …
Thermodynamic constraints on the assembly and diversity of microbial ecosystems are different near to and far from equilibrium
Non-equilibrium thermodynamics has long been an area of substantial interest to ecologists
because most fundamental biological processes, such as protein synthesis and respiration …
because most fundamental biological processes, such as protein synthesis and respiration …
Dynamic proteome allocation regulates the profile of interaction of auxotrophic bacterial consortia
D Reyes-González… - Royal Society …, 2022 - royalsocietypublishing.org
Microbial ecosystems are composed of multiple species in constant metabolic exchange. A
pervasive interaction in microbial communities is metabolic cross-feeding and occurs when …
pervasive interaction in microbial communities is metabolic cross-feeding and occurs when …
Microbiomes Through The Looking Glass
Bacterial communities are pivotal to maintaining ecological function and preserving the rich
tapestry of biological diversity. The rapid development of environmental sequencing …
tapestry of biological diversity. The rapid development of environmental sequencing …
Metabolic Trade-offs can Reverse the Resource-Diversity Relationship
ZR Miller, JP O'Dwyer - The American Naturalist, 2024 - journals.uchicago.edu
For species that partition resources, the classic expectation is that increasing resource
diversity allows for increased species diversity. On the other hand, for neutral species, such …
diversity allows for increased species diversity. On the other hand, for neutral species, such …
Bacterial strategies in prolonged stationary phase: Tradeoff between cell growth, maintenance, and recycling
Q Zhang, Y Chen, H Shi - Physical Review Research, 2023 - APS
In continuous starvation, bacteria will enter an extended stationary phase after the death
phase. Growth-advantaged genetic mutations gradually emerge in the long-term stationary …
phase. Growth-advantaged genetic mutations gradually emerge in the long-term stationary …