Enhancer grammar in development, evolution, and disease: dependencies and interplay
Each language has standard books describing that language's grammatical rules. Biologists
have searched for similar, albeit more complex, principles relating enhancer sequence to …
have searched for similar, albeit more complex, principles relating enhancer sequence to …
From Notochord Formation to Hereditary Chordoma: The Many Roles of Brachyury
Y Nibu, DS José-Edwards… - BioMed research …, 2013 - Wiley Online Library
Chordoma is a rare, but often malignant, bone cancer that preferentially affects the axial
skeleton and the skull base. These tumors are both sporadic and hereditary and appear to …
skeleton and the skull base. These tumors are both sporadic and hereditary and appear to …
Diverse logics and grammar encode notochord enhancers
The notochord is a defining feature of all chordates. The transcription factors Zic and ETS
regulate enhancer activity within the notochord. We conduct high-throughput screens of …
regulate enhancer activity within the notochord. We conduct high-throughput screens of …
Conserved enhancers control notochord expression of vertebrate Brachyury
CL Kemmler, J Smolikova, HR Moran… - Nature …, 2023 - nature.com
The cell type-specific expression of key transcription factors is central to development and
disease. Brachyury/T/TBXT is a major transcription factor for gastrulation, tailbud patterning …
disease. Brachyury/T/TBXT is a major transcription factor for gastrulation, tailbud patterning …
Genomic targets of Brachyury (T) in differentiating mouse embryonic stem cells
Background The T-box transcription factor Brachyury (T) is essential for formation of the
posterior mesoderm and the notochord in vertebrate embryos. Work in the frog and the …
posterior mesoderm and the notochord in vertebrate embryos. Work in the frog and the …
Evolution of the bilaterian mouth and anus
It is widely held that the bilaterian tubular gut with mouth and anus evolved from a simple gut
with one major gastric opening. However, there is no consensus on how this happened. Did …
with one major gastric opening. However, there is no consensus on how this happened. Did …
Cis-regulatory interfaces reveal the molecular mechanisms underlying the notochord gene regulatory network of Ciona
LJ Negrón-Piñeiro, Y Wu, S Popsuj… - Nature …, 2024 - nature.com
Tissue-specific gene expression is fundamental in development and evolution, and is
mediated by transcription factors and by the cis-regulatory regions (enhancers) that they …
mediated by transcription factors and by the cis-regulatory regions (enhancers) that they …
Functional and evolutionary insights from the Ciona notochord transcriptome
WM Reeves, Y Wu, MJ Harder, MT Veeman - Development, 2017 - journals.biologists.com
The notochord of the ascidian Ciona consists of only 40 cells, and is a longstanding model
for studying organogenesis in a small, simple embryo. Here, we perform RNAseq on flow …
for studying organogenesis in a small, simple embryo. Here, we perform RNAseq on flow …
The notochord gene regulatory network in chordate evolution: Conservation and divergence from Ciona to vertebrates
A Di Gregorio - Current Topics in Developmental Biology, 2020 - Elsevier
The notochord is a structure required for support and patterning of all chordate embryos,
from sea squirts to humans. An increasing amount of information on notochord development …
from sea squirts to humans. An increasing amount of information on notochord development …
[HTML][HTML] Integrated microarray and ChIP analysis identifies multiple Foxa2 dependent target genes in the notochord
The node and notochord are key tissues required for patterning of the vertebrate body plan.
Understanding the gene regulatory network that drives their formation and function is …
Understanding the gene regulatory network that drives their formation and function is …