A structural metagenomics pipeline for examining the gut microbiome
ME Walker, JB Simpson, MR Redinbo - Current opinion in structural biology, 2022 - Elsevier
Metagenomic sequencing data provide a rich resource from which to expand our
understanding of differential protein functions involved in human health. Here, we outline a …
understanding of differential protein functions involved in human health. Here, we outline a …
Activity‐Based Protein Profiling–Enabling Phenotyping of Host‐Associated and Environmental Microbiomes
AT Wright, LRA Hudson… - Israel Journal of Chemistry, 2023 - Wiley Online Library
Host‐associated and environmental microbiomes play central roles in human health,
biogeochemical cycling, response to ecosystem change, and agriculture. Scientific …
biogeochemical cycling, response to ecosystem change, and agriculture. Scientific …
Chemoproteomic profiling reveals the mechanism of bile acid tolerance in bacteria
B Liu, S Zhuang, R Tian, Y Liu, Y Wang… - ACS Chemical …, 2022 - ACS Publications
Bile acids (BAs) are a class of endogenous metabolites with important functions. As
amphipathic molecules, BAs have strong antibacterial effects, preventing overgrowth of the …
amphipathic molecules, BAs have strong antibacterial effects, preventing overgrowth of the …
Roseateles albus sp. nov., Roseateles koreensis sp. nov. and Janthinobacterium fluminis sp. nov., isolated from freshwater at Jucheon River, and emended …
S Park, I Kim, G Chhetri, Y So… - … of Systematic and …, 2023 - microbiologyresearch.org
Three Gram-stain-negative, facultatively anaerobic, rod-shaped, catalase-positive, oxidase-
negative bacterial strains were designated as hw1T, hw8T and hw3T. Strains hw1T, hw8T …
negative bacterial strains were designated as hw1T, hw8T and hw3T. Strains hw1T, hw8T …
Chemical proteomic analysis of bile acid-protein targets in Enterococcus faecium
Bile acids are important gut microbiota metabolites that regulate both host and microbial
functions. To identify the direct protein targets of bile acids in Enterococcus, we synthesized …
functions. To identify the direct protein targets of bile acids in Enterococcus, we synthesized …
Simvastatin induces human gut bacterial cell surface genes
Drugs intended to target mammalian cells can have broad off‐target effects on the human
gut microbiota with potential downstream consequences for drug efficacy and side effect …
gut microbiota with potential downstream consequences for drug efficacy and side effect …
Activity-based protein profiling in microbes and the gut microbiome
Activity-based protein profiling (ABPP) is a powerful chemical approach for probing protein
function and enzymatic activity in complex biological systems. This strategy typically utilizes …
function and enzymatic activity in complex biological systems. This strategy typically utilizes …
Activity-based metaproteomics driven discovery and enzymological characterization of potential α-galactosidases in the mouse gut microbiome
J Jiang, D Czuchry, Y Ru, H Peng, J Shen… - Communications …, 2024 - nature.com
The gut microbiota offers an extensive resource of enzymes, but many remain
uncharacterized. To distinguish the activities of similar annotated proteins and mine the …
uncharacterized. To distinguish the activities of similar annotated proteins and mine the …
Selection and enrichment of microbial species with an increased lignocellulolytic phenotype from a native soil microbiome by activity-based probing
Multi-omic analyses can provide information on the potential for activity within a microbial
community but often lack specificity to link functions to cell, primarily offer potential for …
community but often lack specificity to link functions to cell, primarily offer potential for …
Chemoproteomic approaches for unraveling prokaryotic biology
KP Malarney, PV Chang - Israel journal of chemistry, 2023 - Wiley Online Library
Bacteria are ubiquitous lifeforms with important roles in the environment, biotechnology, and
human health. Many of the functions that bacteria perform are mediated by proteins and …
human health. Many of the functions that bacteria perform are mediated by proteins and …