[HTML][HTML] Nanopore sequencing technology, bioinformatics and applications

Y Wang, Y Zhao, A Bollas, Y Wang, KF Au - Nature biotechnology, 2021 - nature.com
Rapid advances in nanopore technologies for sequencing single long DNA and RNA
molecules have led to substantial improvements in accuracy, read length and throughput …

Current and emerging trends in techniques for plant pathogen detection

M Venbrux, S Crauwels, H Rediers - Frontiers in Plant Science, 2023 - frontiersin.org
Plant pathogenic microorganisms cause substantial yield losses in several economically
important crops, resulting in economic and social adversity. The spread of such plant …

Current developments and challenges in plant viral diagnostics: A systematic review

GT Mehetre, VV Leo, G Singh, A Sorokan, I Maksimov… - Viruses, 2021 - mdpi.com
Plant viral diseases are the foremost threat to sustainable agriculture, leading to several
billion dollars in losses every year. Many viruses infecting several crops have been …

Freshwater monitoring by nanopore sequencing

L Urban, A Holzer, JJ Baronas, MB Hall… - Elife, 2021 - elifesciences.org
While traditional microbiological freshwater tests focus on the detection of specific bacterial
indicator species, including pathogens, direct tracing of all aquatic DNA through …

[HTML][HTML] Applications of environmental DNA (eDNA) in agricultural systems: Current uses, limitations and future prospects

JH Kestel, DL Field, PW Bateman, NE White… - Science of the Total …, 2022 - Elsevier
Global food production, food supply chains and food security are increasingly stressed by
human population growth and loss of arable land, becoming more vulnerable to …

Real‐time genomics for One Health

L Urban, A Perlas, O Francino… - Molecular Systems …, 2023 - embopress.org
The ongoing degradation of natural systems and other environmental changes has put our
society at a crossroad with respect to our future relationship with our planet. While the …

Global advances in tomato virome research: current status and the impact of high-throughput sequencing

MPS Rivarez, A Vučurović, N Mehle… - Frontiers in …, 2021 - frontiersin.org
Viruses cause a big fraction of economically important diseases in major crops, including
tomato. In the past decade (2011–2020), many emerging or re-emerging tomato-infecting …

Global role of crop genomics in the face of climate change

M Pourkheirandish, AA Golicz, PL Bhalla… - Frontiers in Plant …, 2020 - frontiersin.org
The development of climate change resilient crops is necessary if we are to meet the
challenge of feeding the growing world's population. We must be able to increase food …

Molecular approaches for low-cost point-of-care pathogen detection in agriculture and forestry

P Baldi, N La Porta - Frontiers in Plant Science, 2020 - frontiersin.org
Early detection of plant diseases is a crucial factor to prevent or limit the spread of a rising
infection that could cause significant economic loss. Detection test on plant diseases in the …

A primer on the analysis of high-throughput sequencing data for detection of plant viruses

D Kutnjak, L Tamisier, I Adams, N Boonham… - Microorganisms, 2021 - mdpi.com
High-throughput sequencing (HTS) technologies have become indispensable tools
assisting plant virus diagnostics and research thanks to their ability to detect any plant virus …