[HTML][HTML] Ensemble deep learning model for protein secondary structure prediction using NLP metrics and explainable AI

U Vignesh, R Parvathi, KG Ram - Results in Engineering, 2024 - Elsevier
Proteins are a major part of all living organisms, consisting of chains made from amino
acids, and they perform various biological processes such as DNA replication, metabolism …

mCNN-glucose: Identifying families of glucose transporters using a deep convolutional neural network based on multiple-scanning windows

SMA Shah, M Rafi, MS Malik, SA Malik… - International Journal of …, 2025 - Elsevier
Glucose transporters are essential carrier proteins that function on the phospholipid bilayer
to facilitate glucose diffusion across cell membranes. The transporters play many …

VesiMCNN: Using pre-trained protein language models and multiple window scanning convolutional neural networks to identify vesicular transport proteins

YH Tseng, YC Liu, MS Malik, YY Ou - International Journal of Biological …, 2024 - Elsevier
Vesicular transport is a critical cellular process responsible for the proper organization and
functioning of eukaryotic cells. This mechanism relies on specialized vesicles that shuttle …