Reconstruction and flux analysis of coupling between metabolic pathways of astrocytes and neurons: application to cerebral hypoxia
T Çakιr, S Alsan, H Saybaşιlι, A Akιn… - Theoretical Biology and …, 2007 - Springer
Background It is a daunting task to identify all the metabolic pathways of brain energy
metabolism and develop a dynamic simulation environment that will cover a time scale …
metabolism and develop a dynamic simulation environment that will cover a time scale …
A critical examination of stoichiometric and path-finding approaches to metabolic pathways
FJ Planes, JE Beasley - Briefings in bioinformatics, 2008 - academic.oup.com
Advances in the field of genomics have enabled computational analysis of metabolic
pathways at the genome scale. Singular attention has been devoted in the literature to …
pathways at the genome scale. Singular attention has been devoted in the literature to …
Structural robustness of metabolic networks with respect to multiple knockouts
J Behre, T Wilhelm, A von Kamp, E Ruppin… - Journal of theoretical …, 2008 - Elsevier
We present a generalised framework for analysing structural robustness of metabolic
networks, based on the concept of elementary flux modes (EFMs). Extending our earlier …
networks, based on the concept of elementary flux modes (EFMs). Extending our earlier …
Can sugars be produced from fatty acids? A test case for pathway analysis tools
Motivation: In recent years, several methods have been proposed for determining metabolic
pathways in an automated way based on network topology. The aim of this work is to …
pathways in an automated way based on network topology. The aim of this work is to …
Analysis of structural robustness of metabolic networks
T Wilhelm, J Behre, S Schuster - Systems biology, 2004 - IET
We study the structural robustness of metabolic networks on the basis of the concept of
elementary flux modes. It is shown that the number of elementary modes itself is not an …
elementary flux modes. It is shown that the number of elementary modes itself is not an …
The stimulatory effect of mannitol on levan biosynthesis: Lessons from metabolic systems analysis of Halomonas smyrnensis AAD6T
Halomonas smyrnensis AADT is a halophilic, gram‐negative bacterium that can efficiently
produce levan from sucrose as carbon source via levansucrase activity. However, systems …
produce levan from sucrose as carbon source via levansucrase activity. However, systems …
A metabolic control analysis approach to introduce the study of systems in biochemistry: the glycolytic pathway in the red blood cell
CR Angelani, P Carabias, KM Cruz… - Biochemistry and …, 2018 - Wiley Online Library
Metabolic control analysis (MCA) is a promising approach in biochemistry aimed at
understanding processes in a quantitative fashion. Here the contribution of enzymes and …
understanding processes in a quantitative fashion. Here the contribution of enzymes and …
Human metabolic network reconstruction and its impact on drug discovery and development
H Ma, I Goryanin - Drug discovery today, 2008 - Elsevier
This paper describes the process for the reconstruction of a high quality human metabolic
network from the genome information, the existing problems in the reconstruction and why a …
network from the genome information, the existing problems in the reconstruction and why a …
Adenine and adenosine salvage pathways in erythrocytes and the role of S‐adenosylhomocysteine hydrolase: A theoretical study using elementary flux modes
S Schuster, D Kenanov - The FEBS journal, 2005 - Wiley Online Library
This article is devoted to the study of redundancy and yield of salvage pathways in human
erythrocytes. These cells are not able to synthesize ATP de novo. However, the salvage …
erythrocytes. These cells are not able to synthesize ATP de novo. However, the salvage …
Association between G6PD deficiency and hyperbilirubinemia in neonates: a meta-analysis
H Liu, W Liu, X Tang, T Wang - Pediatric hematology and oncology, 2015 - Taylor & Francis
Hyperbilirubinemia is prevalent in newborns and multiple factors are responsible for the
occurrence of neonatal hyperbilirubinemia. G6PD (Glucose-6-Phosphate Dehydrogenase) …
occurrence of neonatal hyperbilirubinemia. G6PD (Glucose-6-Phosphate Dehydrogenase) …