Opportunities and tradeoffs in single-cell transcriptomic technologies

MI Conte, A Fuentes-Trillo, CD Conde - Trends in Genetics, 2024 - cell.com
Recent technological and algorithmic advances enable single-cell transcriptomic analysis
with remarkable depth and breadth. Nonetheless, a persistent challenge is the compromise …

Extrinsic and intrinsic drivers of natural killer cell clonality

T Rückert, C Romagnani - Immunological Reviews, 2024 - Wiley Online Library
Clonal expansion of antigen‐specific lymphocytes is the fundamental mechanism enabling
potent adaptive immune responses and the generation of immune memory. Accompanied …

Random allelic expression in the adult human body

SN Kravitz, E Ferris, MI Love, A Thomas, AR Quinlan… - Cell reports, 2023 - cell.com
Genes are typically assumed to express both parental alleles similarly, yet cell lines show
random allelic expression (RAE) for many autosomal genes that could shape genetic effects …

MSL2 ensures biallelic gene expression in mammals

Y Sun, M Wiese, R Hmadi, R Karayol, J Seyfferth… - Nature, 2023 - nature.com
In diploid organisms, biallelic gene expression enables the production of adequate levels of
mRNA,. This is essential for haploinsufficient genes, which require biallelic expression for …

Highly structured homolog pairing reflects functional organization of the Drosophila genome

J AlHaj Abed, J Erceg, A Goloborodko… - Nature …, 2019 - nature.com
Trans-homolog interactions have been studied extensively in Drosophila, where homologs
are paired in somatic cells and transvection is prevalent. Nevertheless, the detailed structure …

Natural genetic variation reveals key features of epigenetic and transcriptional memory in virus-specific CD8 T cells

J van der Veeken, Y Zhong, R Sharma, L Mazutis… - Immunity, 2019 - cell.com
Stable changes in chromatin states and gene expression in cells of the immune system form
the basis for memory of infections and other challenges. Here, we used naturally occurring …

Perspectives on allele-specific expression

S Cleary, C Seoighe - Annual Review of Biomedical Data …, 2021 - annualreviews.org
Diploidy has profound implications for population genetics and susceptibility to genetic
diseases. Although two copies are present for most genes in the human genome, they are …

Parental bias in expression and interaction of genes in the equine placenta

P Dini, T Kalbfleisch… - Proceedings of the …, 2021 - National Acad Sciences
Most autosomal genes in the placenta show a biallelic expression pattern. However, some
genes exhibit allele-specific transcription depending on the parental origin of the …

Introns control stochastic allele expression bias

B Sands, S Yun, AR Mendenhall - Nature Communications, 2021 - nature.com
Monoallelic expression (MAE) or extreme allele bias can account for incomplete penetrance,
missing heritability and non-Mendelian diseases. In cancer, MAE is associated with shorter …

The good, the bad, and the ugly: Evolutionary and pathological aspects of gene dosage alterations

MF Basilicata, CI Keller Valsecchi - PLoS Genetics, 2021 - journals.plos.org
Diploid organisms contain a maternal and a paternal genome complement that is thought to
provide robustness and allow developmental progression despite genetic perturbations that …