Metagenomic approaches to analyze antimicrobial resistance: an overview
Antimicrobial resistance is a major global public health problem, which develops when
pathogens acquire antimicrobial resistance genes (ARGs), primarily through genetic …
pathogens acquire antimicrobial resistance genes (ARGs), primarily through genetic …
Forensic applications of microbiomics: a review
JM Robinson, Z Pasternak, CE Mason… - Frontiers in …, 2021 - frontiersin.org
The rise of microbiomics and metagenomics has been driven by advances in genomic
sequencing technology, improved microbial sampling methods, and fast-evolving …
sequencing technology, improved microbial sampling methods, and fast-evolving …
MEGARes 2.0: a database for classification of antimicrobial drug, biocide and metal resistance determinants in metagenomic sequence data
Antimicrobial resistance (AMR) is a threat to global public health and the identification of
genetic determinants of AMR is a critical component to epidemiological investigations. High …
genetic determinants of AMR is a critical component to epidemiological investigations. High …
Shotgun transcriptome, spatial omics, and isothermal profiling of SARS-CoV-2 infection reveals unique host responses, viral diversification, and drug interactions
In less than nine months, the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-
CoV-2) killed over a million people, including> 25,000 in New York City (NYC) alone. The …
CoV-2) killed over a million people, including> 25,000 in New York City (NYC) alone. The …
Cartography of opportunistic pathogens and antibiotic resistance genes in a tertiary hospital environment
Although disinfection is key to infection control, the colonization patterns and resistomes of
hospital-environment microbes remain underexplored. We report the first extensive genomic …
hospital-environment microbes remain underexplored. We report the first extensive genomic …
Metagraph: Indexing and analysing nucleotide archives at petabase-scale
The amount of biological sequencing data available in public repositories is growing
exponentially, forming an invaluable biomedical research resource. Yet, making all this …
exponentially, forming an invaluable biomedical research resource. Yet, making all this …
Water and soil contaminated by arsenic: the use of microorganisms and plants in bioremediation
PN Bertin, S Crognale, F Plewniak… - … Science and Pollution …, 2021 - Springer
Owing to their roles in the arsenic (As) biogeochemical cycle, microorganisms and plants
offer significant potential for developing innovative biotechnological applications able to …
offer significant potential for developing innovative biotechnological applications able to …
A comprehensive metagenomics framework to characterize organisms relevant for planetary protection
Background Clean rooms of the Space Assembly Facility (SAF) at the Jet Propulsion
Laboratory (JPL) at NASA are the final step of spacecraft cleaning and assembly before …
Laboratory (JPL) at NASA are the final step of spacecraft cleaning and assembly before …
M etagenomic insights into the microbial communities of inert and oligotrophic outdoor pier surfaces of a coastal city
Background Studies of the microbiomes on surfaces in built environment have largely
focused on indoor spaces, while outdoor spaces have received far less attention. Piers are …
focused on indoor spaces, while outdoor spaces have received far less attention. Piers are …
The impact of cross-kingdom molecular forensics on genetic privacy
Recent advances in metagenomic technology and computational prediction may
inadvertently weaken an individual's reasonable expectation of privacy. Through cross …
inadvertently weaken an individual's reasonable expectation of privacy. Through cross …