Bringing the animal QTLdb and CorrDB into the future: meeting new challenges and providing updated services

ZL Hu, CA Park, JM Reecy - Nucleic acids research, 2022 - academic.oup.com
Abstract The Animal QTLdb (https://www. animalgenome. org/QTLdb) and CorrDB
(https://www. animalgenome. org/CorrDB) are unique resources for livestock animal …

PlantPAN3. 0: a new and updated resource for reconstructing transcriptional regulatory networks from ChIP-seq experiments in plants

CN Chow, TY Lee, YC Hung, GZ Li… - Nucleic acids …, 2019 - academic.oup.com
Abstract The Plant Promoter Analysis Navigator (PlantPAN; http://PlantPAN. itps. ncku. edu.
tw/) is an effective resource for predicting regulatory elements and reconstructing …

Mining for allelic gold: finding genetic variation in photosynthetic traits in crops and wild relatives

RE Sharwood, WP Quick, D Sargent… - Journal of …, 2022 - academic.oup.com
Improvement of photosynthetic traits in crops to increase yield potential and crop resilience
has recently become a major breeding target. Synthetic biology and genetic technologies …

Evolutionary divergence of duplicated genomes in newly described allotetraploid cottons

R Peng, Y Xu, S Tian, T Unver, Z Liu… - Proceedings of the …, 2022 - National Acad Sciences
Allotetraploid cotton (Gossypium) species represents a model system for the study of plant
polyploidy, molecular evolution, and domestication. Here, chromosome-scale genome …

Cucurbit Genomics Database (CuGenDB): a central portal for comparative and functional genomics of cucurbit crops

Y Zheng, S Wu, Y Bai, H Sun, C Jiao, S Guo… - Nucleic acids …, 2019 - academic.oup.com
The Cucurbitaceae family (cucurbit) includes several economically important crops, such as
melon, cucumber, watermelon, pumpkin, squash and gourds. During the past several years …

CottonGen: the community database for cotton genomics, genetics, and breeding research

J Yu, S Jung, CH Cheng, T Lee, P Zheng, K Buble… - Plants, 2021 - mdpi.com
Over the last eight years, the volume of whole genome, gene expression, SNP genotyping,
and phenotype data generated by the cotton research community has exponentially …

Genome-wide expression analysis of phospholipase A1 (PLA1) gene family suggests phospholipase A1-32 gene responding to abiotic stresses in cotton

H Zhang, Y Zhang, N Xu, C Rui, Y Fan, J Wang… - International Journal of …, 2021 - Elsevier
Cotton is the most important crop for the production of natural fibres used in the textile
industry. High salinity, drought, cold and high temperature represent serious abiotic …

CottonMD: a multi-omics database for cotton biological study

Z Yang, J Wang, Y Huang, S Wang, L Wei… - Nucleic Acids …, 2023 - academic.oup.com
Cotton is an important economic crop, and many loci for important traits have been
identified, but it remains challenging and time-consuming to identify candidate or causal …

CottonFGD: an integrated functional genomics database for cotton

T Zhu, C Liang, Z Meng, G Sun, Z Meng, S Guo… - BMC plant biology, 2017 - Springer
Abstract Background Cotton (Gossypium spp.) is the most important fiber and oil crop in the
world. With the emergence of huge-omics data sets, it is essential to have an integrated …

A global survey of alternative splicing in allopolyploid cotton: landscape, complexity and regulation

M Wang, P Wang, F Liang, Z Ye, J Li, C Shen… - New …, 2018 - Wiley Online Library
Alternative splicing (AS) is a crucial regulatory mechanism in eukaryotes, which acts by
greatly increasing transcriptome diversity. The extent and complexity of AS has been …