HESML: a real-time semantic measures library for the biomedical domain with a reproducible survey

JJ Lastra-Díaz, A Lara-Clares, A Garcia-Serrano - BMC bioinformatics, 2022 - Springer
Background Ontology-based semantic similarity measures based on SNOMED-CT, MeSH,
and Gene Ontology are being extensively used in many applications in biomedical text …

GO-based functional dissimilarity of gene sets

N Díaz-Díaz, JS Aguilar-Ruiz - BMC bioinformatics, 2011 - Springer
Abstract Background The Gene Ontology (GO) provides a controlled vocabulary for
describing the functions of genes and can be used to evaluate the functional coherence of …

[PDF][PDF] Improving semantic similarity for proteins based on the gene ontology

C Pesquita - Genome, 2007 - Citeseer
One of the current challenges in the Life Sciences is to extract the knowledge contained in
the vast amount of data that the genomic and post-genomic techniques are producing. One …

Application of fuzzy clustering in analysis of included proteins in esophagus, stomach and colon cancers based on similarity of Gene Ontology annotation

HA Majd, MR Tavirani, N Kheyr… - Koomesh, 2010 - brieflands.com
: Introduction: Because of producing large amount of proteomics data and requiring new
procedures for analyzing them, collective analysis of proteins can help us in identifying new …

Functional coherence and annotation agreement metrics for enzyme families

HPS Bastos - 2015 - repositorio.ul.pt
A range of methodologies is used to create sequence annotations, from manual curation by
specialized curators to several automatic procedures. The multitude of existing annotation …

[PDF][PDF] شور و داﻮﻣ ﺎﻫ

GO Slim, W Gestalt - sid.ir
Application of fuzzy clustering in analysis of included proteins in esophagus, stomach and
colon cancers based on similarity of Page 1 ﻲﻤﻠﻋ ﻪﻠﺠﻣ نﺎﻨﻤﺳ ﻲﻜﺷﺰﭘ مﻮﻠﻋ هﺎﮕﺸﻧاد ﺪﻠﺟ 12 هرﺎﻤﺷ ، 1) ﻲﭘﺎﻴﭘ 37 …‎

Functional Coherence and Annotation Agreement Metrics for Enzyme Families

HP da Silva Bastos - 2015 - search.proquest.com
A range of methodologies is used to create sequence annotations, from manual curation by
specialized curators to several automatic procedures. The multitude of existing annotation …

مقایسه نتایج خوشه‌بندی سلسله مراتبی و غیرسلسله مراتبی پروتئین‌های مرتبط با سرطان‌های مری، معده و کلون براساس تشابهات تفسیر هستی‌شناسی ژنی

علوی مجد, زرنگارنیا, یلدا, رضایی طاویرانی, خیر… - دانشور …, 2010‎ - journals.shahed.ac.ir
مقدمه و هدف: به کارگیری روش های پروتئومیک و پیشرفت پژوهش های با توان بالای پروتئین ها
زمینه ساز نیاز به روش های تازه در تحلیل های بیوانفورماتیک نتایج آزمایشگاهی-شده است. تحلیل …

BOLOS: BLAST & Ontology Linked-hOmologue Stars

HP Bastos, C Pesquita, D Faria, AO Falcao - Proceedings of the 2008 …, 2008 - dl.acm.org
The growing number of protein sequences in databases has lead to, among other issues, an
increase in redundancy, since many of the new sequences are similar to others already in …

[引用][C] Clustering algorithms for improving protein functional classification techniques

HP da Silva Bastos - 2007