CARD 2020: antibiotic resistome surveillance with the comprehensive antibiotic resistance database
Abstract The Comprehensive Antibiotic Resistance Database (CARD; https://card. mcmaster.
ca) is a curated resource providing reference DNA and protein sequences, detection models …
ca) is a curated resource providing reference DNA and protein sequences, detection models …
MEGARes 2.0: a database for classification of antimicrobial drug, biocide and metal resistance determinants in metagenomic sequence data
Antimicrobial resistance (AMR) is a threat to global public health and the identification of
genetic determinants of AMR is a critical component to epidemiological investigations. High …
genetic determinants of AMR is a critical component to epidemiological investigations. High …
[HTML][HTML] Metagenomic-based surveillance systems for antibiotic resistance in non-clinical settings
The success of antibiotics as a therapeutic agent has led to their ineffectiveness. The
continuous use and misuse in clinical and non-clinical areas have led to the emergence and …
continuous use and misuse in clinical and non-clinical areas have led to the emergence and …
MEGARes and AMR++, v3. 0: an updated comprehensive database of antimicrobial resistance determinants and an improved software pipeline for classification using …
N Bonin, E Doster, H Worley, LJ Pinnell… - Nucleic acids …, 2023 - academic.oup.com
Antimicrobial resistance (AMR) is considered a critical threat to public health, and
genomic/metagenomic investigations featuring high-throughput analysis of sequence data …
genomic/metagenomic investigations featuring high-throughput analysis of sequence data …
[HTML][HTML] HMD-ARG: hierarchical multi-task deep learning for annotating antibiotic resistance genes
Background The spread of antibiotic resistance has become one of the most urgent threats
to global health, which is estimated to cause 700,000 deaths each year globally. Its …
to global health, which is estimated to cause 700,000 deaths each year globally. Its …
The association between insertion sequences and antibiotic resistance genes
M Razavi, E Kristiansson, CF Flach, DGJ Larsson - Msphere, 2020 - Am Soc Microbiol
Insertion sequences (ISs) are abundant mobile genetic elements on bacterial genomes,
responsible for mobilization of many genes, including antibiotic resistance genes (ARGs). As …
responsible for mobilization of many genes, including antibiotic resistance genes (ARGs). As …
Progressing antimicrobial resistance sensing technologies across human, animal, and environmental health domains
KJ Fitzpatrick, HJ Rohlf, TD Sutherland, KM Koo… - ACS …, 2021 - ACS Publications
The spread of antimicrobial resistance (AMR) is a rapidly growing threat to humankind on
both regional and global scales. As countries worldwide prepare to embrace a One Health …
both regional and global scales. As countries worldwide prepare to embrace a One Health …
[HTML][HTML] Machine learning algorithm to characterize antimicrobial resistance associated with the International Space Station surface microbiome
Background Antimicrobial resistance (AMR) has a detrimental impact on human health on
Earth and it is equally concerning in other environments such as space habitat due to …
Earth and it is equally concerning in other environments such as space habitat due to …
[HTML][HTML] Survey of drug resistance associated gene mutations in Mycobacterium tuberculosis, ESKAPE and other bacterial species
Tuberculosis treatment includes broad-spectrum antibiotics such as rifampicin, streptomycin
and fluoroquinolones, which are also used against other pathogenic bacteria. We …
and fluoroquinolones, which are also used against other pathogenic bacteria. We …
AMR-meta: a k-mer and metafeature approach to classify antimicrobial resistance from high-throughput short-read metagenomics data
Background Antimicrobial resistance (AMR) is a global health concern. High-throughput
metagenomic sequencing of microbial samples enables profiling of AMR genes through …
metagenomic sequencing of microbial samples enables profiling of AMR genes through …