Community deception or: How to stop fearing community detection algorithms

V Fionda, G Pirro - IEEE Transactions on Knowledge and Data …, 2017 - ieeexplore.ieee.org
In this paper, we research the community deception problem. Tackling this problem consists
in developing techniques to hide a target community (C) from community detection …

Topological ranks reveal functional knowledge encoded in biological networks: a comparative analysis

M Bonomo, R Giancarlo, D Greco… - Briefings in …, 2022 - academic.oup.com
Motivation Biological networks topology yields important insights into biological function,
occurrence of diseases and drug design. In the last few years, different types of topological …

Searching for repetitions in biological networks: methods, resources and tools

S Panni, SE Rombo - Briefings in bioinformatics, 2015 - academic.oup.com
We present here a compact overview of the data, models and methods proposed for the
analysis of biological networks based on the search for significant repetitions. In particular …

A knowledge graph to analyze clinical patient data

M Bonomo, F Ippolito, S Morfea - European Conference on Advances in …, 2023 - Springer
Abstract Knowledge graphs may be successfully applied to represent different types of
relationships among different types of subjects. Here, we propose a Knowledge Graph …

A benchmark dataset for community deception algorithms

V Fionda - Social Network Analysis and Mining, 2024 - Springer
This paper introduces the Better Hide Communities (BHC) benchmark dataset aimed at
standardizing evaluations in community deception across networks. BHC addresses the …

An evolutionary restricted neighborhood search clustering approach for PPI networks

C Pizzuti, SE Rombo - Neurocomputing, 2014 - Elsevier
Protein–protein interaction networks have been broadly studied in the last few years, in
order to understand the behavior of proteins inside the cell. Proteins interacting with each …

Biological network querying techniques: analysis and comparison

V Fionda, L Palopoli - Journal of Computational Biology, 2011 - liebertpub.com
Research in systems biology has made available large amounts of data about interactions
among cell building blocks (eg, proteins, genes). To properly look up these data and mine …

RESQUE: Network reduction using semi-Markov random walk scores for efficient querying of biological networks

SME Sahraeian, BJ Yoon - Bioinformatics, 2012 - academic.oup.com
Motivation: Recent technological advances in measuring molecular interactions have
resulted in an increasing number of large-scale biological networks. Translation of these …

Protein–Protein Interaction Network Analysis Using NetworkX

M Hasan, N Kumar, A Majeed, A Ahmad… - … Interactions: Methods and …, 2023 - Springer
In recent years, extracting information from biological data has become a particularly
valuable way of gaining knowledge. Molecular interaction networks provide a framework for …

Better Hide Communities: Benchmarking Community Deception Algorithms

V Fionda - International Conference on Complex Networks and …, 2023 - Springer
This paper introduces the Better Hide Communities (BHC) benchmark dataset, purposefully
crafted for gauging the efficacy of current and prospective community deception algorithms …