Best practices in metabarcoding of fungi: from experimental design to results
The development of high‐throughput sequencing (HTS) technologies has greatly improved
our capacity to identify fungi and unveil their ecological roles across a variety of ecosystems …
our capacity to identify fungi and unveil their ecological roles across a variety of ecosystems …
Alternaria alternata as endophyte and pathogen
M DeMers - Microbiology, 2022 - microbiologyresearch.org
Alternaria alternata is a common species of fungus frequently isolated from plants as both an
endophyte and a pathogen. Although the current definition of A. alternata rests on a …
endophyte and a pathogen. Although the current definition of A. alternata rests on a …
The UNITE database for molecular identification and taxonomic communication of fungi and other eukaryotes: sequences, taxa and classifications reconsidered
Abstract UNITE (https://unite. ut. ee) is a web-based database and sequence management
environment for molecular identification of eukaryotes. It targets the nuclear ribosomal …
environment for molecular identification of eukaryotes. It targets the nuclear ribosomal …
The numbers of fungi: are the most speciose genera truly diverse?
Fungi play vital roles in ecosystems as endophytes, pathogens and saprobes. The current
estimate of fungal diversity is highly uncertain, ranging from 1.5 to 12 million, but only …
estimate of fungal diversity is highly uncertain, ranging from 1.5 to 12 million, but only …
Mycobiota and diet-derived fungal xenosiderophores promote Salmonella gastrointestinal colonization
The fungal gut microbiota (mycobiota) has been implicated in diseases that disturb gut
homeostasis, such as inflammatory bowel disease. However, little is known about functional …
homeostasis, such as inflammatory bowel disease. However, little is known about functional …
[HTML][HTML] How, not if, is the question mycologists should be asking about DNA-based typification
Abstract Fungal metabarcoding of substrates such as soil, wood, and water is uncovering
an unprecedented number of fungal species that do not seem to produce tangible …
an unprecedented number of fungal species that do not seem to produce tangible …
Current insight into culture-dependent and culture-independent methods in discovering Ascomycetous Taxa
NN Wijayawardene, M Bahram, I Sánchez-Castro… - Journal of Fungi, 2021 - mdpi.com
Culture techniques are vital in both traditional and modern fungal taxonomy. Establishing
sexual–asexual links and synanamorphs, extracting DNA and secondary metabolites are …
sexual–asexual links and synanamorphs, extracting DNA and secondary metabolites are …
Widespread bacterial diversity within the bacteriome of fungi
AJ Robinson, GL House, DP Morales… - Communications …, 2021 - nature.com
Abstract Knowledge of associations between fungal hosts and their bacterial associates has
steadily grown in recent years as the number and diversity of examinations have increased …
steadily grown in recent years as the number and diversity of examinations have increased …
A globally integrated structure of taxonomy to support biodiversity science and conservation
All aspects of biodiversity research, from taxonomy to conservation, rely on data associated
with species names. Effective integration of names across multiple fields is paramount and …
with species names. Effective integration of names across multiple fields is paramount and …
COInr and mkCOInr: Building and customizing a nonredundant barcoding reference database from BOLD and NCBI using a semi‐automated pipeline
E Meglécz - Molecular Ecology Resources, 2023 - Wiley Online Library
Reference databases with wide taxonomic coverage are greatly needed in many fields of
biology, most particularly for the taxonomic assignment of metabarcoding sequences …
biology, most particularly for the taxonomic assignment of metabarcoding sequences …