Nitrification and nitrifiers in acidic soils

Y Li, SJ Chapman, GW Nicol, H Yao - Soil Biology and Biochemistry, 2018 - Elsevier
Nitrification, as a crucial step in nitrogen cycling and plant nutrition, is a biologically
mediated process responsible for enormous losses of nitrogen fertilizer and a contributor to …

Microbial regulation of terrestrial nitrous oxide formation: understanding the biological pathways for prediction of emission rates

HW Hu, D Chen, JZ He - FEMS microbiology reviews, 2015 - academic.oup.com
The continuous increase of the greenhouse gas nitrous oxide (N2O) in the atmosphere due
to increasing anthropogenic nitrogen input in agriculture has become a global concern. In …

Protist communities are more sensitive to nitrogen fertilization than other microorganisms in diverse agricultural soils

ZB Zhao, JZ He, S Geisen, LL Han, JT Wang, JP Shen… - Microbiome, 2019 - Springer
Background Agricultural food production is at the base of food and fodder, with fertilization
having fundamentally and continuously increased crop yield over the last decades. The …

Archaeal and bacterial ammonia-oxidisers in soil: the quest for niche specialisation and differentiation

JI Prosser, GW Nicol - Trends in microbiology, 2012 - cell.com
Autotrophic archaeal and bacterial ammonia-oxidisers (AOA and AOB) drive soil nitrification.
Ammonia limitation, mixotrophy, and pH have been suggested as factors providing niche …

Pathways and key intermediates required for obligate aerobic ammonia-dependent chemolithotrophy in bacteria and Thaumarchaeota

JA Kozlowski, M Stieglmeier, C Schleper… - The ISME …, 2016 - academic.oup.com
Chemolithotrophic ammonia-oxidizing bacteria and Thaumarchaeota are central players in
the global nitrogen cycle. Obligate ammonia chemolithotrophy has been characterized for …

Nitrogen transformations

GP Robertson, PM Groffman - Soil microbiology, ecology and biochemistry, 2024 - Elsevier
Nitrogen is essential for life on Earth. Soil biota are responsible for its accumulation,
persistence, and loss from ecosystems. Microbial nitrogen transformations include its …

Ammonia-oxidizing archaea have more important role than ammonia-oxidizing bacteria in ammonia oxidation of strongly acidic soils

LM Zhang, HW Hu, JP Shen, JZ He - The ISME journal, 2012 - academic.oup.com
Increasing evidence demonstrated the involvement of ammonia-oxidizing archaea (AOA) in
the global nitrogen cycle, but the relative contributions of AOA and ammonia-oxidizing …

HT-SIP: a semi-automated stable isotope probing pipeline identifies cross-kingdom interactions in the hyphosphere of arbuscular mycorrhizal fungi

EE Nuccio, SJ Blazewicz, M Lafler, AN Campbell… - Microbiome, 2022 - Springer
Background Linking the identity of wild microbes with their ecophysiological traits and
environmental functions is a key ambition for microbial ecologists. Of many techniques that …

Diversity, physiology, and niche differentiation of ammonia-oxidizing archaea

R Hatzenpichler - Applied and environmental microbiology, 2012 - Am Soc Microbiol
Nitrification, the aerobic oxidation of ammonia to nitrate via nitrite, has been suggested to
have been a central part of the global biogeochemical nitrogen cycle since the oxygenation …

Physiology and diversity of ammonia-oxidizing archaea

DA Stahl, JR De La Torre - Annual review of microbiology, 2012 - annualreviews.org
The discovery of ammonia-oxidizing archaea (AOA), now generally recognized to exert
primary control over ammonia oxidation in terrestrial, marine, and geothermal habitats …