Pseudoknots have been recognized to be an important type of RNA secondary structures
responsible for many biological functions. PseudoBase, a widely used database of …

Background Modeling of a complex biological process can explain the results of
experimental studies and help predict its characteristics. Among such processes is …

Short leader genes usually do not encode stable proteins, although their importance in
expression control of bacterial genomes is widely accepted. Such genes are often involved …

A large-scale search for attenuation regulation in bacteria was performed using two original
computer programs, which modeled the attenuation regulation and multiple alignment along …

Background In previous work, we introduced a concept, a mathematical model and its
computer realization that describe the interaction between bacterial and phage type RNA …

The paper studies proteins with domains PF00480 or PF14340, as well as some other
poorly characterized proteins, encoded by genes associated with leader peptide genes …

Рассматривается задача параллельного моделирования многочисленных итераций
метода Монте-Карло на суперкомпьютерах с распределённой памятью. Требуется …

RNAmodel web server was recently established at the IITP RAS to implement our previously
proposed model of the classic attenuation regulation of gene expression in bacteria. This …

An algorithm for modeling the evolution of the regulatory signals involving the interaction
with RNA secondary structure is proposed. The algorithm implies that the species …

The classical attenuation regulation of gene expression in bacteria is considered. We
propose to represent the secondary RNA structure in the leader region of a gene or an …