The relative thermal stability of tissue macromolecules and cellular structure in burn injury

F Despa, DP Orgill, J Neuwalder, RC Lee - burns, 2005 - Elsevier
When tissue is subjected to higher than physiological temperatures, protein and cell
organelle structures can be altered resulting in cell death and subsequent tissue necrosis. A …

Toxin neutralization using alternative binding proteins

TP Jenkins, T Fryer, RI Dehli, JA Jürgensen… - Toxins, 2019 - mdpi.com
Animal toxins present a major threat to human health worldwide, predominantly through
snakebite envenomings, which are responsible for over 100,000 deaths each year. To date …

The identification of conserved interactions within the SH3 domain by alignment of sequences and structures

SM Larson, AR Davidson - Protein Science, 2000 - cambridge.org
The SH3 domain, comprised of approximately 60 residues, is found within a wide variety of
proteins, and is a mediator of protein–protein interactions. Due to the large number of SH3 …

Stabilizing salt-bridge enhances protein thermostability by reducing the heat capacity change of unfolding

CH Chan, TH Yu, KB Wong - PloS one, 2011 - journals.plos.org
Most thermophilic proteins tend to have more salt bridges, and achieve higher
thermostability by up-shifting and broadening their protein stability curves. While the …

Thermodynamic differences among homologous thermophilic and mesophilic proteins

S Kumar, CJ Tsai, R Nussinov - Biochemistry, 2001 - ACS Publications
Here, we analyze the thermodynamic parameters and their correlations in families
containing homologous thermophilic and mesophilic proteins which show reversible two …

Analysis of covariation in an SH3 domain sequence alignment: applications in tertiary contact prediction and the design of compensating hydrophobic core …

SM Larson, AA Di Nardo, AR Davidson - Journal of molecular biology, 2000 - Elsevier
We have analyzed sequence covariation in an alignment of 266 non-redundant SH3 domain
sequences using chi-squared statistical methods. Artifactual covariations arising from close …

A novel, non-immunogenic Fyn SH3-derived binding protein with tumor vascular targeting properties

D Grabulovski, M Kaspar, D Neri - Journal of Biological Chemistry, 2007 - ASBMB
The generation of novel binding molecules based on protein frameworks (" scaffolds")
represents an emerging field in protein engineering, with the potential to replace antibodies …

Rescuing a destabilized protein fold through backbone cyclization

JA Camarero, D Fushman, S Sato, I Giriat… - Journal of molecular …, 2001 - Elsevier
We describe the physicochemical characterization of various circular and linear forms of
the∼ 60 residue N-terminal Src homology 3 (SH3) domain from the murine c-Crk adapter …

Conformational strain in the hydrophobic core and its implications for protein folding and design

S Ventura, M Cristina Vega, E Lacroix… - Nature structural …, 2002 - nature.com
We have designed de novo 13 divergent spectrin SH3 core sequences to determine their
folding properties. Kinetic analysis of the variants with stability similar to that of the wild type …

Ultra-fast barrier-limited folding in the peripheral subunit-binding domain family

N Ferguson, TD Sharpe, PJ Schartau, S Sato… - Journal of molecular …, 2005 - Elsevier
We have determined the solution structures, equilibrium properties and ultra-fast folding
kinetics for three bacterial homologues of the peripheral subunit-binding domain (PSBD) …