The 2022 Nucleic Acids Research database issue and the online molecular biology database collection

DJ Rigden, XM Fernández - Nucleic acids research, 2022 - academic.oup.com
Abstract The 2022 Nucleic Acids Research Database Issue contains 185 papers, including
87 papers reporting on new databases and 85 updates from resources previously published …

[HTML][HTML] A comprehensive overview of microbiome data in the light of machine learning applications: categorization, accessibility, and future directions

B Kumar, E Lorusso, B Fosso, G Pesole - Frontiers in Microbiology, 2024 - frontiersin.org
Metagenomics, Metabolomics, and Metaproteomics have significantly advanced our
knowledge of microbial communities by providing culture-independent insights into their …

[HTML][HTML] Osteocyte mitochondria regulate angiogenesis of transcortical vessels

P Liao, L Chen, H Zhou, J Mei, Z Chen, B Wang… - Nature …, 2024 - nature.com
Transcortical vessels (TCVs) provide effective communication between bone marrow
vascular system and external circulation. Although osteocytes are in close contact with them …

[HTML][HTML] First-in-class MKK4 inhibitors enhance liver regeneration and prevent liver failure

S Zwirner, AAA Rmilah, S Klotz, B Pfaffenroth… - Cell, 2024 - cell.com
Diminished hepatocyte regeneration is a key feature of acute and chronic liver diseases and
after extended liver resections, resulting in the inability to maintain or restore a sufficient …

[HTML][HTML] A 5: 2 intermittent fasting regimen ameliorates NASH and fibrosis and blunts HCC development via hepatic PPARα and PCK1

S Gallage, A Ali, JEB Avila, N Seymen, P Ramadori… - Cell Metabolism, 2024 - cell.com
The role and molecular mechanisms of intermittent fasting (IF) in non-alcoholic
steatohepatitis (NASH) and its transition to hepatocellular carcinoma (HCC) are unknown …

Multi-omic analysis tools for microbial metabolites prediction

S Wu, H Zhou, D Chen, Y Lu, Y Li… - Briefings in …, 2024 - academic.oup.com
How to resolve the metabolic dark matter of microorganisms has long been a challenging
problem in discovering active molecules. Diverse omics tools have been developed to guide …

Obscurity of chlorophyll tails‐Is chlorophyll with farnesyl tail incorporated into PSII complexes?

AT Graça, J Lihavainen, R Hussein… - Physiologia …, 2024 - Wiley Online Library
Chlorophyll is essential in photosynthesis, converting sunlight into chemical energy in
plants, algae, and certain bacteria. Its structure, featuring a porphyrin ring enclosing a …

[HTML][HTML] Multiomic profiling of medulloblastoma reveals subtype-specific targetable alterations at the proteome and N-glycan level

S Godbole, H Voß, A Gocke, S Schlumbohm… - Nature …, 2024 - nature.com
Medulloblastomas (MBs) are malignant pediatric brain tumors that are molecularly and
clinically heterogenous. The application of omics technologies—mainly studying nucleic …

[HTML][HTML] Illuminating the dark space of neutral glycosphingolipidome by selective enrichment and profiling at multi-structural levels

Z Wang, D Zhang, J Wu, W Zhang, Y Xia - Nature Communications, 2024 - nature.com
Glycosphingolipids (GSLs) are essential components of cell membranes, particularly
enriched in the nervous system. Altered molecular distributions of GSLs are increasingly …

DNA nanomachines reveal an adaptive energy mode in confinement-induced amoeboid migration powered by polarized mitochondrial distribution

Y Liu, YJ Wang, Y Du, W Liu, X Huang… - Proceedings of the …, 2024 - National Acad Sciences
Energy metabolism is highly interdependent with adaptive cell migration in vivo. Mechanical
confinement is a critical physical cue that induces switchable migration modes of the …