Revealing neuronal function through microelectrode array recordings
Microelectrode arrays and microprobes have been widely utilized to measure neuronal
activity, both in vitro and in vivo. The key advantage is the capability to record and stimulate …
activity, both in vitro and in vivo. The key advantage is the capability to record and stimulate …
Approximation and inference methods for stochastic biochemical kinetics—a tutorial review
D Schnoerr, G Sanguinetti… - Journal of Physics A …, 2017 - iopscience.iop.org
Stochastic fluctuations of molecule numbers are ubiquitous in biological systems. Important
examples include gene expression and enzymatic processes in living cells. Such systems …
examples include gene expression and enzymatic processes in living cells. Such systems …
Quantitative and logic modelling of molecular and gene networks
N Le Novere - Nature Reviews Genetics, 2015 - nature.com
Behaviours of complex biomolecular systems are often irreducible to the elementary
properties of their individual components. Explanatory and predictive mathematical models …
properties of their individual components. Explanatory and predictive mathematical models …
Modelling and analysis of gene regulatory networks
G Karlebach, R Shamir - Nature reviews Molecular cell biology, 2008 - nature.com
Gene regulatory networks have an important role in every process of life, including cell
differentiation, metabolism, the cell cycle and signal transduction. By understanding the …
differentiation, metabolism, the cell cycle and signal transduction. By understanding the …
Systems medicine: the future of medical genomics and healthcare
High-throughput technologies for DNA sequencing and for analyses of transcriptomes,
proteomes and metabolomes have provided the foundations for deciphering the structure …
proteomes and metabolomes have provided the foundations for deciphering the structure …
Modelling the molecular mechanisms of synaptic plasticity using systems biology approaches
JH Kotaleski, KT Blackwell - Nature Reviews Neuroscience, 2010 - nature.com
Synaptic plasticity is thought to underlie learning and memory, but the complexity of the
interactions between the ion channels, enzymes and genes that are involved in synaptic …
interactions between the ion channels, enzymes and genes that are involved in synaptic …
Evolving a lingua franca and associated software infrastructure for computational systems biology: the Systems Biology Markup Language (SBML) project
M Hucka, A Finney, BJ Bornstein, SM Keating… - Systems biology, 2004 - IET
Biologists are increasingly recognising that computational modelling is crucial for making
sense of the vast quantities of complex experimental data that are now being collected. The …
sense of the vast quantities of complex experimental data that are now being collected. The …
Diffusion-controlled reactions modeling in Geant4-DNA
Context Under irradiation, a biological system undergoes a cascade of chemical reactions
that can lead to an alteration of its normal operation. There are different types of radiation …
that can lead to an alteration of its normal operation. There are different types of radiation …
[HTML][HTML] Space in systems biology of signaling pathways–towards intracellular molecular crowding in silico
K Takahashi, SNV Arjunan, M Tomita - FEBS letters, 2005 - Elsevier
How cells utilize intracellular spatial features to optimize their signaling characteristics is still
not clearly understood. The physical distance between the cell-surface receptor and the …
not clearly understood. The physical distance between the cell-surface receptor and the …
Rule-based multi-level modeling of cell biological systems
Background Proteins, individual cells, and cell populations denote different levels of an
organizational hierarchy, each of which with its own dynamics. Multi-level modeling is …
organizational hierarchy, each of which with its own dynamics. Multi-level modeling is …