Opportunities and challenges of single-cell and spatially resolved genomics methods for neuroscience discovery

B Bonev, CB Gonçalo, F Chen, S Codeluppi… - Nature …, 2024 - nature.com
Over the past decade, single-cell genomics technologies have allowed scalable profiling of
cell-type-specific features, which has substantially increased our ability to study cellular …

Custom microfluidic chip design enables cost-effective three-dimensional spatiotemporal transcriptomics with a wide field of view

J Zhu, K Pang, B Hu, R He, N Wang, Z Jiang, P Ji… - Nature Genetics, 2024 - nature.com
Spatial transcriptomic techniques offer unprecedented insights into the molecular
organization of complex tissues. However, integrating cost-effectiveness, high throughput, a …

Single-cell DNA methylome and 3D multi-omic atlas of the adult mouse brain

H Liu, Q Zeng, J Zhou, A Bartlett, BA Wang, P Berube… - Nature, 2023 - nature.com
Cytosine DNA methylation is essential in brain development and is implicated in various
neurological disorders. Understanding DNA methylation diversity across the entire brain in a …

Molecular and cellular mechanisms of selective vulnerability in neurodegenerative diseases

M Kampmann - Nature Reviews Neuroscience, 2024 - nature.com
The selective vulnerability of specific neuronal subtypes is a hallmark of neurodegenerative
diseases. In this Review, I summarize our current understanding of the brain regions and …

[HTML][HTML] Comparative analysis of multiplexed in situ gene expression profiling technologies

A Hartman, R Satija - eLife, 2024 - elifesciences.org
The burgeoning interest in in situ multiplexed gene expression profiling technologies has
opened new avenues for understanding cellular behavior and interactions. In this study, we …

Search and match across spatial omics samples at single-cell resolution

Z Tang, S Luo, H Zeng, J Huang, X Sui, M Wu… - Nature methods, 2024 - nature.com
Spatial omics technologies characterize tissue molecular properties with spatial information,
but integrating and comparing spatial data across different technologies and modalities is …

Whole-cortex in situ sequencing reveals input-dependent area identity

X Chen, S Fischer, MCP Rue, A Zhang, D Mukherjee… - Nature, 2024 - nature.com
The cerebral cortex is composed of neuronal types with diverse gene expression that are
organized into specialized cortical areas. These areas, each with characteristic …

[HTML][HTML] CSMD1 regulates brain complement activity and circuit development

ML Baum, DK Wilton, RG Fox, A Carey… - Brain, Behavior, and …, 2024 - Elsevier
Complement proteins facilitate synaptic elimination during neurodevelopmental pruning, but
neural complement regulation is not well understood. CUB and Sushi Multiple Domains 1 …

Cellular atlases of the entire mouse brain

MA Tosches, HJ Lee - 2023 - nature.com
Cellular atlases of the entire mouse brain Skip to main content Thank you for visiting nature.com.
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Applying single-cell and single-nucleus genomics to studies of cellular heterogeneity and cell fate transitions in the nervous system

I Adameyko, T Bakken, A Bhaduri, C Chhatbar… - Nature …, 2024 - nature.com
Single-cell and single-nucleus genomic approaches can provide unbiased and multimodal
insights. Here, we discuss what constitutes a molecular cell atlas and how to leverage single …