[HTML][HTML] Best practices for generating and analyzing 16S rRNA amplicon data to track coral microbiome dynamics

DP Silva, HE Epstein, RL Vega Thurber - Frontiers in Microbiology, 2023 - frontiersin.org
Over the past two decades, researchers have searched for methods to better understand the
relationship between coral hosts and their microbiomes. Data on how coral-associated …

Filamentous virus-like particles are present in coral dinoflagellates across genera and ocean basins

LI Howe-Kerr, AM Knochel, MD Meyer… - The ISME …, 2023 - academic.oup.com
Filamentous viruses are hypothesized to play a role in stony coral tissue loss disease
(SCTLD) through infection of the endosymbiotic dinoflagellates (Family Symbiodiniaceae) of …

Multiomics data integration, limitations, and prospects to reveal the metabolic activity of the coral holobiont

A Williams - FEMS Microbiology Ecology, 2024 - academic.oup.com
Since their radiation in the Middle Triassic period∼ 240 million years ago, stony corals have
survived past climate fluctuations and five mass extinctions. Their long-term survival …

Gas Chromatography-Mass Spectrometry-based targeted metabolomics of hard Coral samples

JL Matthews, N Bartels, SNE Doomun, SK Davy… - JoVE (Journal of …, 2023 - jove.com
Gas chromatography-mass spectrometry (GC-MS)-based approaches have proven to be
powerful for elucidating the metabolic basis of the cnidarian-dinoflagellate symbiosis and …

[HTML][HTML] Baseline dynamics of Symbiodiniaceae genera and photochemical efficiency in corals from reefs with different thermal histories

CJ McRae, S Keshavmurthy, HK Chen, ZM Ye… - PeerJ, 2023 - peerj.com
Ocean warming and marine heatwaves induced by climate change are impacting coral reefs
globally, leading to coral bleaching and mortality. Yet, coral resistance and resilience to …

[HTML][HTML] Understanding nitrogen dynamics in coral holobionts: comprehensive review of processes, advancements, gaps, and future directions

M Li, HX Sheng, M Dai, SJ Kao - Frontiers in Marine Science, 2023 - frontiersin.org
Coral reefs are known for being highly productive ecosystems in oligotrophic oceans, which
is commonly referred to as the Darwin's Paradox. Nitrogen is an essential component of …

[图书][B] Marine microbiomes: Towards standard methods and best practices

S Pesant, KD Goodwin, C Magalhães… - 2023 - books.google.com
A decade of technological advances and research on the human microbiome has re-defined
our understanding of biological systems, and now offers diagnostic tools and new …

[PDF][PDF] Detecting and interpreting viral dynamics in marine invertebrate holobionts

AJ Veglia - 2023 - repository.rice.edu
All multicellular organisms harbor microbial symbionts (eg, protists, viruses, bacteria,
archaea, fungi), living and evolving collectively as a single biological unit termed the …

[HTML][HTML] Coral reef research methods

JD Reimer, N Yasuda, S Keshavmurthy - Frontiers in Marine Science, 2022 - frontiersin.org
Coral and coral reefs are facing increasing existential threats to their existence as a result of
stress from human-accelerated climate change and other various human pressures (Hughes …

Author Spotlight: Separation of Coral Host Tissues and Algal Symbionts and Analyzing Their Metabolites

JL Matthews, N Bartels, SNE Doomun, SK Davy… - JoVE (Journal of …, 2023 - jove.com
Gas chromatography-mass spectrometry (GC-MS)-based approaches have proven to be
powerful for elucidating the metabolic basis of the cnidarian-dinoflagellate symbiosis and …