Comparative analysis of the existing methods for prediction of antifreeze proteins

A Khan, J Uddin, F Ali, A Banjar, A Daud - Chemometrics and Intelligent …, 2023 - Elsevier
Antifreeze proteins (AFPs) are found in different living organisms like plants, insects, and
fish. AFPs avoid the formation of ice crystals in these organisms and make them able to …

[HTML][HTML] XGB-DrugPred: computational prediction of druggable proteins using eXtreme gradient boosting and optimized features set

R Sikander, A Ghulam, F Ali - Scientific reports, 2022 - nature.com
Accurate identification of drug-targets in human body has great significance for designing
novel drugs. Compared with traditional experimental methods, prediction of drug-targets via …

[HTML][HTML] Single-stranded DNA binding proteins and their identification using machine learning-based approaches

JT Guo, F Malik - Biomolecules, 2022 - mdpi.com
Single-stranded DNA (ssDNA) binding proteins (SSBs) are critical in maintaining genome
stability by protecting the transient existence of ssDNA from damage during essential …

Deep-AntiFP: Prediction of antifungal peptides using distanct multi-informative features incorporating with deep neural networks

A Ahmad, S Akbar, S Khan, M Hayat, F Ali… - Chemometrics and …, 2021 - Elsevier
World widely, Fungal infections have become a serious issue for human beings. Fungal
infections normally happen once invading fungus appear on a specific area of the body and …

Prediction of antiviral peptides using transform evolutionary & SHAP analysis based descriptors by incorporation with ensemble learning strategy

S Akbar, F Ali, M Hayat, A Ahmad, S Khan… - … and Intelligent Laboratory …, 2022 - Elsevier
Viral diseases are a major health concern in the last few years. Antiviral peptides (AVPs)
belong to a type of antimicrobial peptides (AMPs) that have the high potential to defend the …

DBP-CNN: Deep learning-based prediction of DNA-binding proteins by coupling discrete cosine transform with two-dimensional convolutional neural network

O Barukab, F Ali, W Alghamdi, Y Bassam… - Expert Systems with …, 2022 - Elsevier
To improve the prediction of DNA-binding Proteins (DBPs), this paper presents a deep
learning-based method, named DBP-CNN. To efficiently extract the important features, we …

StackACPred: Prediction of anticancer peptides by integrating optimized multiple feature descriptors with stacked ensemble approach

M Arif, S Ahmed, F Ge, M Kabir, YD Khan, DJ Yu… - Chemometrics and …, 2022 - Elsevier
Anticancer peptides (ACPs) have been emerged as a potential safe therapeutic agent for
treating cancer. Identifying novel ACPs is crucial for understanding deep insight their …

AFP-SPTS: an accurate prediction of antifreeze proteins using sequential and pseudo-tri-slicing evolutionary features with an extremely randomized tree

A Khan, J Uddin, F Ali, H Kumar… - Journal of Chemical …, 2023 - ACS Publications
The development of intracellular ice in the bodies of cold-blooded living organisms may
cause them to die. These species yield antifreeze proteins (AFPs) to live in subzero …

DBP-DeepCNN: prediction of DNA-binding proteins using wavelet-based denoising and deep learning

F Ali, H Kumar, S Patil, A Ahmed, A Banjar… - … and Intelligent Laboratory …, 2022 - Elsevier
DNA-binding proteins (DBPs) are highly concerned with several types of cancers (lung,
breast, and liver), other fatal diseases (AIDS/HIV, asthma), and are used in the designing of …

Target-DBPPred: an intelligent model for prediction of DNA-binding proteins using discrete wavelet transform based compression and light eXtreme gradient boosting

F Ali, H Kumar, S Patil, K Kotecha, A Banjar… - Computers in Biology …, 2022 - Elsevier
DNA-protein interaction is a critical biological process that performs influential activities,
including DNA transcription and recombination. DBPs (DNA-binding proteins) are closely …