[HTML][HTML] Molecular modeling in drug discovery
TI Adelusi, AQK Oyedele, ID Boyenle… - Informatics in Medicine …, 2022 - Elsevier
With the financial requirements and high time associated with bringing a commercial drug to
the market, the application of computer-aided drug design has been recognized as a …
the market, the application of computer-aided drug design has been recognized as a …
Gaussian accelerated molecular dynamics: Principles and applications
Gaussian accelerated molecular dynamics (GaMD) is a robust computational method for
simultaneous unconstrained enhanced sampling and free energy calculations of …
simultaneous unconstrained enhanced sampling and free energy calculations of …
Allosteric modulation of GPCRs: From structural insights to in silico drug discovery
M Persechino, JB Hedderich, P Kolb… - Pharmacology & …, 2022 - Elsevier
G protein-coupled receptors (GPCRs) play critical roles in human physiology and are one of
the prime targets for marketed drugs. While traditional drug discovery programs have …
the prime targets for marketed drugs. While traditional drug discovery programs have …
Molecular simulations and drug discovery of adenosine receptors
G protein-coupled receptors (GPCRs) represent the largest family of human membrane
proteins. Four subtypes of adenosine receptors (ARs), the A1AR, A2AAR, A2BAR and …
proteins. Four subtypes of adenosine receptors (ARs), the A1AR, A2AAR, A2BAR and …
Prediction of the drug–target binding kinetics for flexible proteins by comparative binding energy analysis
A Nunes-Alves, F Ormersbach… - Journal of Chemical …, 2021 - ACS Publications
There is growing consensus that the optimization of the kinetic parameters for drug–protein
binding leads to improved drug efficacy. Therefore, computational methods have been …
binding leads to improved drug efficacy. Therefore, computational methods have been …
Application of Molecular Dynamics Simulations to Determine Interactions between Canary Seed (Phalaris canariensis L.) Bioactive Peptides and Skin-Aging …
Food bioactive peptides are well recognized for their health benefits such as antimicrobial,
antioxidant, and antihypertensive benefits, among others. Their drug-like behavior has led to …
antioxidant, and antihypertensive benefits, among others. Their drug-like behavior has led to …
Screening and identification of phytochemical drug molecules against mutant BRCA1 receptor of breast cancer using computational approaches
J Singh, N Sangwan, A Chauhan, P Sarma… - Molecular and Cellular …, 2022 - Springer
Abstract The American Cancer Society claims that breast cancer is the second most
significant cause of cancer-related death, with over one million women diagnosed each …
significant cause of cancer-related death, with over one million women diagnosed each …
In silico design of a chimeric humanized L-asparaginase
A Pedroso, L Herrera Belén, JF Beltrán… - International Journal of …, 2023 - mdpi.com
Acute lymphoblastic leukemia (ALL) is the most common cancer among children worldwide,
characterized by an overproduction of undifferentiated lymphoblasts in the bone marrow …
characterized by an overproduction of undifferentiated lymphoblasts in the bone marrow …
Best practices for docking-based virtual screening
Docking-based virtual screening (DBVS) is well placed in modern drug discovery and is
widely applied with many success cases by both pharmaceutical companies and academic …
widely applied with many success cases by both pharmaceutical companies and academic …
[HTML][HTML] Essential Dynamics Ensemble Docking for Structure-Based GPCR Drug Discovery
K McKay, NB Hamilton, JM Remington… - Frontiers in Molecular …, 2022 - frontiersin.org
The lack of biologically relevant protein structures can hinder rational design of small
molecules to target G protein-coupled receptors (GPCRs). While ensemble docking using …
molecules to target G protein-coupled receptors (GPCRs). While ensemble docking using …